LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
XX-C2158C12.2
hsa-miR-205-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000438217
Biotype: lincRNA
Gene id: ENSG00000213863
Gene Name: XX-C2158C12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
180-201
0.038
Not Conserved
DSCR8
hsa-miR-205-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026839.1
Biotype: sense
Gene id: NR_026839.1 (gene)
Gene Name: DSCR8
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
162-178
0.021
1
8mer
366-385
0.017
0
HCG11
hsa-miR-205-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000411553
Biotype: lincRNA
Gene id: ENSG00000228223
Gene Name: HCG11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1120-1140
0.023
1
6mer
499-520
0.011
1
6mer
1105-1132
0.004
1
RP11-16L9.2
hsa-miR-205-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440162
Biotype: lincRNA
Gene id: ENSG00000225172
Gene Name: RP11-16L9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
775-799
0.038
0
SCHLAP1
hsa-miR-205-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_104324.1
Biotype: lincRNA
Gene id: NR_104324.1 (gene)
Gene Name: SCHLAP1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1095-1119
0.018
0
8mer
431-456
0.017
1
6mer
161-182
0.003
0
RP11-343L5.2
hsa-miR-205-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607625
Biotype: lincRNA
Gene id: ENSG00000271862
Gene Name: RP11-343L5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-445
0.023
1
7mer
1119-1133
0.008
0
6mer
255-276
0.004
0
6mer
1489-1513
0.003
1
LINC00858
hsa-miR-205-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000415469
Biotype: lincRNA
Gene id: ENSG00000229404
Gene Name: LINC00858
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2420-2435
0.030
1
7mer
1269-1290
0.006
3
6mer
1111-1123
0.002
2
6mer
1332-1357
0.001
1
AP000345.2
hsa-miR-205-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000454863
Biotype: antisense
Gene id: ENSG00000224277
Gene Name: AP000345.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-367
0.038
0
AC010226.4
hsa-miR-205-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515570
Biotype: antisense
Gene id: ENSG00000249249
Gene Name: AC010226.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-156
0.029
2
6mer
672-688
0.009
9
RP11-712B9.2
hsa-miR-205-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540692
Biotype: antisense
Gene id: ENSG00000245552
Gene Name: RP11-712B9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1179-1198
0.032
3
6mer
447-471
0.006
5
RP11-537A6.9
hsa-miR-205-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000427492
Biotype: antisense
Gene id: ENSG00000233144
Gene Name: RP11-537A6.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-266
0.038
2
LINC00674
hsa-miR-205-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000620266
Biotype: lincRNA
Gene id: ENSG00000278730
Gene Name: LINC00674
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
804-821
0.016
1
7mer
361-388
0.011
1
7mer
2471-2489
0.006
2
6mer
437-460
0.004
2
6mer
967-992
0.001
0
RP11-68L18.1
hsa-miR-205-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000501194
Biotype: antisense
Gene id: ENSG00000246792
Gene Name: RP11-68L18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
397-421
0.015
1
7mer
2694-2720
0.013
1
7mer
1597-1622
0.006
1
6mer
2827-2854
0.002
0
6mer
2476-2495
0.001
1
XLOC_003425
hsa-miR-205-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007956
Biotype: transcript isomorph
Gene id: XLOC_003425
Gene Name: XLOC_003425
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
696-715
0.032
1
6mer
264-285
0.005
0
XLOC_004495
hsa-miR-205-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010050
Biotype: transcript isomorph
Gene id: XLOC_004495
Gene Name: XLOC_004495
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
561-585
0.023
2
7mer
456-478
0.011
1
6mer
410-427
0.004
1
XLOC_007348
hsa-miR-205-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016575
Biotype: transcript isomorph
Gene id: XLOC_007348
Gene Name: XLOC_007348
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
614-641
0.022
0
7mer
276-295
0.016
3
LINC00347
hsa-miR-205-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000597518
Biotype: lincRNA
Gene id: ENSG00000236678
Gene Name: LINC00347
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
527-542
0.030
1
6mer
451-464
0.008
5
RP11-344E13.3
hsa-miR-205-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577841
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
324-341
0.028
0
7mer
301-325
0.009
0
RP11-344E13.3
hsa-miR-205-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000443508
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
906-923
0.028
0
7mer
883-907
0.009
0
RP11-950C14.7
hsa-miR-205-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556236
Biotype: antisense
Gene id: ENSG00000259138
Gene Name: RP11-950C14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
246-271
0.037
1
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