LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
XLOC_011715
hsa-miR-205-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024390
Biotype: transcript isomorph
Gene id: XLOC_011715
Gene Name: XLOC_011715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2971-2989
0.025
1
7mer
3224-3250
0.008
3
6mer
1921-1936
0.002
3
6mer
1083-1098
0.002
1
6mer
2459-2485
0.001
0
6mer
2116-2142
0.001
2
RP11-864J10.4
hsa-miR-205-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546714
Biotype: antisense
Gene id: ENSG00000258136
Gene Name: RP11-864J10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
218-242
0.039
0
FTX
hsa-miR-205-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602576
Biotype: lincRNA
Gene id: ENSG00000230590
Gene Name: FTX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-194
0.030
2
7mer
519-538
0.008
0
SCHLAP1
hsa-miR-205-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_104325.1
Biotype: lincRNA
Gene id: NR_104325.1 (gene)
Gene Name: SCHLAP1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1164-1188
0.019
0
8mer
431-456
0.017
1
6mer
161-182
0.003
0
MIR205HG
hsa-miR-205-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451937
Biotype: retained_intron
Gene id: ENSG00000230937
Gene Name: MIR205HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
844-868
0.039
1
SCHLAP1
hsa-miR-205-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_104322.1
Biotype: lincRNA
Gene id: NR_104322.1 (gene)
Gene Name: SCHLAP1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1302-1326
0.019
0
8mer
431-456
0.017
1
6mer
161-182
0.003
0
SOX2-OT
hsa-miR-205-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460739
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
91-112
0.018
1
8mer
528-552
0.007
1
6mer
171-190
0.005
7
6mer
399-424
0.005
1
6mer
468-484
0.003
4
RP11-344B5.2
hsa-miR-205-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000455981
Biotype: lincRNA
Gene id: ENSG00000224307
Gene Name: RP11-344B5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
466-492
0.038
0
RP11-806K15.1
hsa-miR-205-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514864
Biotype: antisense
Gene id: ENSG00000249106
Gene Name: RP11-806K15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
907-932
0.035
5
6mer
1079-1098
0.003
1
LINC00920
hsa-miR-205-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000499966
Biotype: lincRNA
Gene id: ENSG00000246898
Gene Name: LINC00920
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1474-1494
0.033
1
6mer
349-360
0.003
1
6mer
709-724
0.002
0
XLOC_008495
hsa-miR-205-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018740
Biotype: transcript isomorph
Gene id: XLOC_008495
Gene Name: XLOC_008495
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
687-708
0.038
1
RP11-265N7.2
hsa-miR-205-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560129
Biotype: lincRNA
Gene id: ENSG00000259423
Gene Name: RP11-265N7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
292-309
0.038
5
DSCR8
hsa-miR-205-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026838.1
Biotype: sense
Gene id: NR_026838.1 (gene)
Gene Name: DSCR8
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
162-178
0.020
1
8mer
366-385
0.018
0
RP11-1082L8.2
hsa-miR-205-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000531948
Biotype: lincRNA
Gene id: ENSG00000255313
Gene Name: RP11-1082L8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
76-96
0.032
0
6mer
436-463
0.007
1
HAGLR
hsa-miR-205-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436126
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-307
0.030
2
6mer
350-371
0.008
5
LINC01330
hsa-miR-205-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496891
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
173-193
0.038
1
RP11-71N10.1
hsa-miR-205-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467198
Biotype: lincRNA
Gene id: ENSG00000239922
Gene Name: RP11-71N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
598-618
0.030
4
7mer
2114-2132
0.006
1
6mer
1880-1897
0.002
1
AC116609.3
hsa-miR-205-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431542
Biotype: lincRNA
Gene id: ENSG00000231173
Gene Name: AC116609.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-192
0.038
0
XLOC_009855
hsa-miR-205-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020235
Biotype: transcript isomorph
Gene id: XLOC_009855
Gene Name: XLOC_009855
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
570-594
0.025
0
7mer
641-656
0.008
0
6mer
753-778
0.004
0
AP000345.2
hsa-miR-205-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458318
Biotype: antisense
Gene id: ENSG00000224277
Gene Name: AP000345.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-367
0.038
0
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