LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
AP000479.1
hsa-miR-205-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526436
Biotype: lincRNA
Gene id: ENSG00000255433
Gene Name: AP000479.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2612-2629
0.023
2
7mer
314-335
0.010
1
6mer
544-570
0.002
1
6mer
192-218
0.002
1
6mer
1118-1144
0.001
Not Conserved
RP11-96A1.5
hsa-miR-205-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000518701
Biotype: lincRNA
Gene id: ENSG00000253825
Gene Name: RP11-96A1.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-277
0.040
0
MIR663AHG
hsa-miR-205-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000593517
Biotype: retained_intron
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-51
0.039
0
RP11-434H14.1
hsa-miR-205-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000552418
Biotype: antisense
Gene id: ENSG00000257277
Gene Name: RP11-434H14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-36
0.021
1
7mer
283-303
0.019
1
AC067961.1
hsa-miR-205-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431435
Biotype: lincRNA
Gene id: ENSG00000232784
Gene Name: AC067961.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-241
0.039
5
RP11-395P13.3
hsa-miR-205-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502275
Biotype: lincRNA
Gene id: ENSG00000249677
Gene Name: RP11-395P13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
317-339
0.039
1
RP11-529K1.4
hsa-miR-205-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566960
Biotype: antisense
Gene id: ENSG00000260111
Gene Name: RP11-529K1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
26-46
0.033
1
6mer
75-87
0.006
2
CTD-2201E18.3
hsa-miR-205-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503152
Biotype: sense_overlapping
Gene id: ENSG00000177738
Gene Name: CTD-2201E18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-156
0.039
0
HOXA10-AS
hsa-miR-205-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000519935
Biotype: antisense
Gene id: ENSG00000253187
Gene Name: HOXA10-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-285
0.039
10
EMX2OS
hsa-miR-205-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000440007
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6591-6615
0.012
1
7mer
699-726
0.011
2
7mer
201-215
0.006
Not Conserved
7mer
3373-3393
0.003
0
6mer
6800-6815
0.002
Not Conserved
6mer
6233-6251
0.002
3
6mer
2416-2432
0.001
3
6mer
1930-1950
0.001
1
6mer
3257-3278
0.001
1
6mer
1840-1859
0.001
1
RP11-80H5.2
hsa-miR-205-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454174
Biotype: antisense
Gene id: ENSG00000232936
Gene Name: RP11-80H5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
199-222
0.036
1
6mer
377-403
0.003
1
CNTFR-AS1
hsa-miR-205-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000436360
Biotype: antisense
Gene id: ENSG00000237159
Gene Name: CNTFR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
361-368
0.039
0
SOX2-OT
hsa-miR-205-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000487240
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-293
0.035
10
6mer
12-28
0.002
1
6mer
63-82
0.002
2
LINC01518
hsa-miR-205-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000411439
Biotype: lincRNA
Gene id: ENSG00000233515
Gene Name: LINC01518
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
276-297
0.039
1
ZNRD1-AS1
hsa-miR-205-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2590-2613
0.014
0
6mer
9577-9603
0.009
1
7mer
2388-2406
0.006
0
6mer
9543-9560
0.005
1
7mer
1405-1429
0.003
0
6mer
2304-2327
0.001
0
RP11-991C1.2
hsa-miR-205-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554033
Biotype: lincRNA
Gene id: ENSG00000258866
Gene Name: RP11-991C1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-381
0.039
0
XLOC_002779
hsa-miR-205-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006171
Biotype: transcript isomorph
Gene id: XLOC_002779
Gene Name: XLOC_002779
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2100-2118
0.018
0
8mer
971-991
0.010
2
7mer
3437-3451
0.008
3
6mer
3879-3905
0.003
0
XLOC_000697
hsa-miR-205-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001385
Biotype: transcript isomorph
Gene id: XLOC_000697
Gene Name: XLOC_000697
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-462
0.035
3
6mer
223-241
0.004
1
RP5-1059L7.1
hsa-miR-205-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000614771
Biotype: antisense
Gene id: ENSG00000278709
Gene Name: RP5-1059L7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2244-2261
0.029
1
6mer
2429-2454
0.005
3
7mer
1670-1686
0.003
0
6mer
1077-1094
0.002
1
RP11-473M20.9
hsa-miR-205-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000577123
Biotype: lincRNA
Gene id: ENSG00000262370
Gene Name: RP11-473M20.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
303-327
0.026
0
6mer
39-64
0.013
0
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