LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
THTPA
hsa-miR-205-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554403
Biotype: retained_intron
Gene id: ENSG00000157306
Gene Name: THTPA
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
653-679
0.012
2
6mer
149-168
0.010
7
7mer
1868-1894
0.007
1
6mer
1740-1755
0.003
4
6mer
1993-2010
0.003
1
6mer
803-828
0.002
2
6mer
1097-1121
0.001
2
6mer
1258-1276
0.001
2
6mer
1878-1903
0.001
1
XLOC_010672
hsa-miR-205-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022068
Biotype: transcript isomorph
Gene id: XLOC_010672
Gene Name: XLOC_010672
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-120
0.033
1
6mer
527-539
0.004
0
6mer
444-466
0.003
0
XLOC_005421
hsa-miR-205-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011186
Biotype: transcript isomorph
Gene id: XLOC_005421
Gene Name: XLOC_005421
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2473-2494
0.035
1
6mer
2542-2561
0.002
2
6mer
2625-2651
0.001
1
6mer
1684-1708
0.001
3
6mer
1783-1807
0.000
1
PCBP1-AS1
hsa-miR-205-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596665
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-369
0.040
1
RP11-24I21.1
hsa-miR-205-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503100
Biotype: lincRNA
Gene id: ENSG00000248210
Gene Name: RP11-24I21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
668-695
0.040
2
LINC00222
hsa-miR-205-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000448744
Biotype: lincRNA
Gene id: ENSG00000203801
Gene Name: LINC00222
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
913-934
0.036
1
6mer
982-1001
0.003
2
6mer
1065-1091
0.001
1
XLOC_014362
hsa-miR-205-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029691
Biotype: transcript isomorph
Gene id: XLOC_014362
Gene Name: XLOC_014362
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
24-44
0.003
Not Conserved
6mer
46-66
0.003
Not Conserved
6mer
426-440
0.003
Not Conserved
6mer
68-88
0.003
Not Conserved
6mer
90-110
0.003
Not Conserved
6mer
112-132
0.003
Not Conserved
6mer
134-154
0.003
Not Conserved
6mer
156-176
0.003
Not Conserved
6mer
200-220
0.003
Not Conserved
6mer
222-242
0.003
Not Conserved
6mer
244-264
0.002
Not Conserved
6mer
266-286
0.002
Not Conserved
6mer
334-354
0.002
Not Conserved
6mer
2-22
0.002
Not Conserved
6mer
292-316
0.002
Not Conserved
RP11-98C1.1
hsa-miR-205-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588733
Biotype: antisense
Gene id: ENSG00000273185
Gene Name: RP11-98C1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
821-835
0.026
2
7mer
21-39
0.014
0
XLOC_011755
hsa-miR-205-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024251
Biotype: transcript isomorph
Gene id: XLOC_011755
Gene Name: XLOC_011755
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1519-1539
0.031
1
6mer
282-304
0.004
1
6mer
394-405
0.003
1
6mer
754-769
0.002
0
RP11-34P13.13
hsa-miR-205-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484859
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-178
0.037
0
7mer
1788-1804
0.002
Not Conserved
LARS2-AS1
hsa-miR-205-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000442534
Biotype: antisense
Gene id: ENSG00000232455
Gene Name: LARS2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
486-511
0.040
2
RP11-686O6.1
hsa-miR-205-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609491
Biotype: lincRNA
Gene id: ENSG00000272966
Gene Name: RP11-686O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
403-423
0.040
2
AC018816.3
hsa-miR-205-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000478724
Biotype: antisense
Gene id: ENSG00000235978
Gene Name: AC018816.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-156
0.040
1
RP11-504A18.1
hsa-miR-205-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569425
Biotype: lincRNA
Gene id: ENSG00000260971
Gene Name: RP11-504A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
775-794
0.024
0
7mer
910-928
0.011
1
6mer
96-112
0.004
0
AC008163.4
hsa-miR-205-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412900
Biotype: lincRNA
Gene id: ENSG00000234113
Gene Name: AC008163.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
560-574
0.040
0
RP1-249I4.2
hsa-miR-205-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458693
Biotype: lincRNA
Gene id: ENSG00000232311
Gene Name: RP1-249I4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
449-462
0.040
5
RP11-67L3.5
hsa-miR-205-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415336
Biotype: antisense
Gene id: ENSG00000242396
Gene Name: RP11-67L3.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
453-477
0.040
1
LOC145845
hsa-miR-205-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_024264.1
Biotype: lincRNA
Gene id: NR_024264.1 (gene)
Gene Name: LOC145845
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
217-237
0.018
4
8mer
1381-1405
0.015
2
7mer
2217-2237
0.006
0
RP11-162K11.4
hsa-miR-205-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000432707
Biotype: sense_intronic
Gene id: ENSG00000231575
Gene Name: RP11-162K11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
81-102
0.040
1
XLOC_014104
hsa-miR-205-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029160
Biotype: transcript isomorph
Gene id: XLOC_014104
Gene Name: XLOC_014104
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
378-404
0.034
1
6mer
309-325
0.005
1
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