LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
MALAT1
hsa-miR-205-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000619449
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
594-608
0.029
1
6mer
642-667
0.005
1
6mer
432-458
0.004
1
6mer
76-100
0.002
0
XXbac-BPG249D20.9
hsa-miR-205-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415195
Biotype: antisense
Gene id: ENSG00000235781
Gene Name: XXbac-BPG249D20.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
699-726
0.025
0
6mer
672-693
0.006
0
6mer
402-414
0.004
0
6mer
569-590
0.004
0
6mer
524-540
0.002
Not Conserved
HOXA10-AS
hsa-miR-205-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000523790
Biotype: antisense
Gene id: ENSG00000253187
Gene Name: HOXA10-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
378-403
0.038
10
6mer
160-180
0.002
2
RP11-806O11.1
hsa-miR-205-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520156
Biotype: retained_intron
Gene id: ENSG00000253671
Gene Name: RP11-806O11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
605-621
0.033
1
6mer
729-740
0.008
0
LINC00670
hsa-miR-205-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577679
Biotype: lincRNA
Gene id: ENSG00000179136
Gene Name: LINC00670
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1043-1063
0.028
0
7mer
148-174
0.010
2
6mer
468-490
0.002
1
XLOC_006625
hsa-miR-205-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013982
Biotype: transcript isomorph
Gene id: XLOC_006625
Gene Name: XLOC_006625
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
940-953
0.025
1
7mer
912-931
0.016
3
KB-1125A3.12
hsa-miR-205-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624923
Biotype: antisense
Gene id: ENSG00000279467
Gene Name: KB-1125A3.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2631-2647
0.020
0
9mer
6546-6566
0.015
0
8mer+wobble
1258-1285
0.004
0
6mer
4827-4850
0.001
0
RP11-356I2.4
hsa-miR-205-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000440578
Biotype: antisense
Gene id: ENSG00000237499
Gene Name: RP11-356I2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-33
0.040
0
RP1-8B1.4
hsa-miR-205-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000437249
Biotype: antisense
Gene id: ENSG00000231769
Gene Name: RP1-8B1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-40
0.036
1
6mer
169-191
0.004
0
EGFLAM-AS1
hsa-miR-205-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508986
Biotype: antisense
Gene id: ENSG00000249491
Gene Name: EGFLAM-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-65
0.040
5
XLOC_000844
hsa-miR-205-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001502
Biotype: transcript isomorph
Gene id: XLOC_000844
Gene Name: XLOC_000844
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-341
0.031
0
7mer
460-478
0.010
1
IGFBP7-AS1
hsa-miR-205-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515865
Biotype: antisense
Gene id: ENSG00000245067
Gene Name: IGFBP7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-46
0.023
1
7mer
74-89
0.014
1
6mer
245-258
0.003
0
C3orf67-AS1
hsa-miR-205-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463703
Biotype: antisense
Gene id: ENSG00000242428
Gene Name: C3orf67-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-59
0.035
1
6mer
394-421
0.005
5
CTA-929C8.9
hsa-miR-205-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
21291-21316
0.011
1
7mer
21482-21499
0.005
0
7mer
5598-5610
0.005
0
6mer
24930-24943
0.004
1
7mer
2258-2284
0.004
1
7mer
21564-21578
0.002
1
6mer
4906-4931
0.002
3
6mer
18436-18451
0.002
1
6mer
3661-3684
0.001
1
6mer
20509-20527
0.001
0
6mer
15826-15840
0.001
Not Conserved
6mer
4623-4646
0.001
1
6mer
20366-20392
0.001
0
AC067959.1
hsa-miR-205-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435237
Biotype: lincRNA
Gene id: ENSG00000233005
Gene Name: AC067959.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-398
0.037
0
6mer
306-320
0.003
0
LOC284581
hsa-miR-205-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046097.1
Biotype: lincRNA
Gene id: NR_046097.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1921-1942
0.024
1
6mer
2531-2557
0.013
1
6mer
580-601
0.003
0
CTB-12O2.1
hsa-miR-205-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523605
Biotype: lincRNA
Gene id: ENSG00000254226
Gene Name: CTB-12O2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-51
0.040
1
LINCMD1
hsa-miR-205-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418518
Biotype: lincRNA
Gene id: ENSG00000225613
Gene Name: LINCMD1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
251-268
0.040
4
RP11-959I15.4
hsa-miR-205-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522005
Biotype: antisense
Gene id: ENSG00000254249
Gene Name: RP11-959I15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-151
0.040
3
IL20RB-AS1
hsa-miR-205-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462176
Biotype: antisense
Gene id: ENSG00000249407
Gene Name: IL20RB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-158
0.035
1
6mer
206-230
0.005
2
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