LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
OSER1-AS1
hsa-miR-205-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000623343
Biotype: lincRNA
Gene id: ENSG00000223891
Gene Name: OSER1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
700-721
0.026
2
7mer
729-747
0.011
1
6mer
661-681
0.005
2
RP11-527H14.4
hsa-miR-205-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584414
Biotype: lincRNA
Gene id: ENSG00000263618
Gene Name: RP11-527H14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
478-500
0.034
1
7mer
394-416
0.008
Not Conserved
RP11-62N21.1
hsa-miR-205-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504357
Biotype: lincRNA
Gene id: ENSG00000248369
Gene Name: RP11-62N21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
147-171
0.022
1
7mer
325-343
0.014
1
6mer
62-88
0.003
1
6mer
56-81
0.002
0
XLOC_012724
hsa-miR-205-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026372
Biotype: transcript isomorph
Gene id: XLOC_012724
Gene Name: XLOC_012724
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
277-295
0.033
9
6mer
116-138
0.009
9
RP11-2F9.4
hsa-miR-205-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565129
Biotype: lincRNA
Gene id: ENSG00000260739
Gene Name: RP11-2F9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
438-462
0.031
0
7mer
406-431
0.007
0
6mer
467-494
0.004
0
RP11-59H7.3
hsa-miR-205-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559026
Biotype: sense_overlapping
Gene id: ENSG00000259732
Gene Name: RP11-59H7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
207-231
0.041
1
LINC01517
hsa-miR-205-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000616194
Biotype: lincRNA
Gene id: ENSG00000232624
Gene Name: LINC01517
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
780-802
0.041
1
MALAT1
hsa-miR-205-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000610481
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
174-199
0.019
3
7mer
29-53
0.014
0
7mer
271-290
0.005
Not Conserved
6mer
253-266
0.003
2
AC108448.3
hsa-miR-205-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000455154
Biotype: antisense
Gene id: ENSG00000234791
Gene Name: AC108448.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-225
0.041
1
RP11-159H22.2
hsa-miR-205-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529258
Biotype: antisense
Gene id: ENSG00000254862
Gene Name: RP11-159H22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
319-326
0.041
1
RP13-638C3.2
hsa-miR-205-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570869
Biotype: sense_intronic
Gene id: ENSG00000262652
Gene Name: RP13-638C3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
480-488
0.041
1
XLOC_007035
hsa-miR-205-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
249-266
0.009
0
7mer
295-309
0.009
2
6mer
1174-1184
0.004
5
7mer
16170-16192
0.003
0
6mer
18558-18572
0.002
Not Conserved
6mer
9508-9535
0.002
0
6mer
13542-13560
0.002
0
6mer
10422-10442
0.002
1
6mer
17879-17889
0.001
0
6mer
17130-17137
0.001
0
6mer
11915-11938
0.001
1
6mer
7666-7685
0.001
1
6mer
5970-5996
0.001
0
6mer
5802-5821
0.001
1
6mer
16206-16216
0.001
Not Conserved
6mer
16978-17000
0.001
0
6mer
7509-7535
0.001
0
CTC-360P9.1
hsa-miR-205-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592270
Biotype: lincRNA
Gene id: ENSG00000267012
Gene Name: CTC-360P9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
132-147
0.037
11
6mer
410-433
0.004
3
XLOC_001498
hsa-miR-205-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002649
Biotype: transcript isomorph
Gene id: XLOC_001498
Gene Name: XLOC_001498
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1179-1195
0.017
0
7mer
1934-1960
0.014
1
7mer
636-651
0.007
1
7mer
767-786
0.003
1
NAV2-AS4
hsa-miR-205-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033989.1
Biotype: antisense
Gene id: NR_033989.1 (gene)
Gene Name: NAV2-AS4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1205-1225
0.019
1
7mer
1023-1044
0.016
3
7mer
1270-1283
0.006
0
RP11-494M8.4
hsa-miR-205-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529488
Biotype: sense_overlapping
Gene id: ENSG00000254951
Gene Name: RP11-494M8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
590-614
0.038
3
6mer
227-253
0.003
1
AC011343.1
hsa-miR-205-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522627
Biotype: lincRNA
Gene id: ENSG00000253311
Gene Name: AC011343.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-286
0.027
0
7mer
341-361
0.007
0
8mer+wobble
1859-1878
0.006
2
6mer
1423-1442
0.001
1
RP11-53B2.2
hsa-miR-205-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000587344
Biotype: sense_intronic
Gene id: ENSG00000267702
Gene Name: RP11-53B2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
273-296
0.018
0
8mer
1278-1300
0.006
1
7mer
832-853
0.004
1
6mer
3585-3592
0.003
1
6mer
67-82
0.002
0
6mer
3306-3330
0.002
1
7mer
890-907
0.002
0
6mer
2443-2469
0.002
1
6mer
1516-1541
0.001
1
RP11-531F16.4
hsa-miR-205-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608000
Biotype: antisense
Gene id: ENSG00000273261
Gene Name: RP11-531F16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
488-511
0.041
1
XLOC_003460
hsa-miR-205-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007997
Biotype: transcript isomorph
Gene id: XLOC_003460
Gene Name: XLOC_003460
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-357
0.041
1
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