LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
XLOC_004559
hsa-miR-205-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009259
Biotype: transcript isomorph
Gene id: XLOC_004559
Gene Name: XLOC_004559
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
510-531
0.027
1
7mer
41-65
0.011
1
6mer
904-930
0.005
0
RP11-282K24.3
hsa-miR-205-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501211
Biotype: sense_intronic
Gene id: ENSG00000253284
Gene Name: RP11-282K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3848-3870
0.031
0
7mer
1833-1850
0.004
4
8mer+wobble
1043-1067
0.003
1
7mer
3918-3939
0.002
1
6mer
1618-1637
0.001
4
AC004862.6
hsa-miR-205-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000598433
Biotype: antisense
Gene id: ENSG00000232667
Gene Name: AC004862.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-311
0.022
1
7mer
249-270
0.011
0
7mer
399-417
0.009
1
XLOC_013455
hsa-miR-205-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028101
Biotype: transcript isomorph
Gene id: XLOC_013455
Gene Name: XLOC_013455
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-56
0.022
1
7mer
259-280
0.008
1
7mer
1180-1194
0.008
1
6mer
55-72
0.005
1
LINC00890
hsa-miR-205-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000569275
Biotype: lincRNA
Gene id: ENSG00000260802
Gene Name: LINC00890
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3269-3292
0.034
4
7mer
839-856
0.005
0
7mer
1318-1339
0.003
2
AC098617.1
hsa-miR-205-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594798
Biotype: antisense
Gene id: ENSG00000233766
Gene Name: AC098617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-182
0.028
1
7mer
41-61
0.014
3
XLOC_007043
hsa-miR-205-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014557
Biotype: transcript isomorph
Gene id: XLOC_007043
Gene Name: XLOC_007043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1908-1931
0.042
0
SNHG16
hsa-miR-205-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000493536
Biotype: lincRNA
Gene id: ENSG00000163597
Gene Name: SNHG16
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
633-650
0.042
1
RP11-442N1.1
hsa-miR-205-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000506934
Biotype: lincRNA
Gene id: ENSG00000250543
Gene Name: RP11-442N1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
148-168
0.042
8
XLOC_008046
hsa-miR-205-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016921
Biotype: transcript isomorph
Gene id: XLOC_008046
Gene Name: XLOC_008046
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3269-3292
0.034
4
7mer
839-856
0.005
0
7mer
1318-1339
0.003
2
XLOC_011881
hsa-miR-205-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024263
Biotype: transcript isomorph
Gene id: XLOC_011881
Gene Name: XLOC_011881
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3-28
0.038
1
6mer
93-115
0.004
0
LINC00963
hsa-miR-205-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000622972
Biotype: lincRNA
Gene id: ENSG00000204054
Gene Name: LINC00963
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-143
0.042
1
XLOC_008830
hsa-miR-205-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018523
Biotype: transcript isomorph
Gene id: XLOC_008830
Gene Name: XLOC_008830
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-278
0.022
0
8mer
578-604
0.013
0
6mer
368-385
0.008
1
LL22NC03-22D1.1
hsa-miR-205-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19351-19368
0.006
1
7mer
10658-10682
0.005
1
7mer
24267-24292
0.005
1
7mer
14915-14931
0.005
0
7mer
18424-18439
0.004
2
6mer
14538-14561
0.002
1
6mer
11307-11333
0.001
0
6mer
4977-5001
0.001
3
6mer
7736-7748
0.001
1
6mer
12229-12251
0.001
0
6mer
15400-15416
0.001
1
6mer
26514-26537
0.001
1
6mer
9179-9205
0.001
Not Conserved
6mer
12753-12780
0.001
2
6mer
7094-7108
0.001
1
6mer
20634-20650
0.001
1
6mer
27212-27227
0.001
0
6mer
12378-12400
0.001
1
CTB-49A3.4
hsa-miR-205-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508950
Biotype: antisense
Gene id: ENSG00000250244
Gene Name: CTB-49A3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-74
0.042
4
RP11-121A8.1
hsa-miR-205-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609522
Biotype: lincRNA
Gene id: ENSG00000272908
Gene Name: RP11-121A8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1391-1409
0.038
1
6mer
980-996
0.004
1
C3orf67-AS1
hsa-miR-205-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492031
Biotype: antisense
Gene id: ENSG00000242428
Gene Name: C3orf67-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-89
0.037
1
6mer
329-356
0.005
5
AC073043.1
hsa-miR-205-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000593967
Biotype: lincRNA
Gene id: ENSG00000232732
Gene Name: AC073043.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-170
0.035
2
6mer
355-378
0.006
2
XLOC_013652
hsa-miR-205-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028317
Biotype: transcript isomorph
Gene id: XLOC_013652
Gene Name: XLOC_013652
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
395-417
0.016
2
6mer
11-29
0.006
1
6mer
222-248
0.004
0
6mer
208-227
0.004
0
6mer
273-293
0.003
1
6mer
246-266
0.003
0
6mer
279-293
0.003
1
6mer
240-257
0.002
0
RP11-168K9.2
hsa-miR-205-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527317
Biotype: lincRNA
Gene id: ENSG00000255087
Gene Name: RP11-168K9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
643-664
0.031
1
6mer
224-247
0.004
1
7mer
273-298
0.004
1
6mer
1817-1836
0.002
1
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