LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
XLOC_003157
hsa-miR-205-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006534
Biotype: transcript isomorph
Gene id: XLOC_003157
Gene Name: XLOC_003157
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
676-698
0.040
0
6mer
372-393
0.004
4
PTPRD-AS1
hsa-miR-205-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430766
Biotype: lincRNA
Gene id: ENSG00000225706
Gene Name: PTPRD-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1206-1227
0.044
2
AC007365.1
hsa-miR-205-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417695
Biotype: lincRNA
Gene id: ENSG00000233694
Gene Name: AC007365.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
923-939
0.017
0
7mer
1678-1704
0.014
1
7mer
380-395
0.008
1
7mer
511-530
0.004
1
RP11-5N11.4
hsa-miR-205-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506865
Biotype: lincRNA
Gene id: ENSG00000248813
Gene Name: RP11-5N11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
323-337
0.022
0
7mer
5-27
0.021
1
AC008067.2
hsa-miR-205-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609950
Biotype: antisense
Gene id: ENSG00000237031
Gene Name: AC008067.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
37-62
0.044
1
RP11-383M4.2
hsa-miR-205-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427387
Biotype: lincRNA
Gene id: ENSG00000230846
Gene Name: RP11-383M4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
395-414
0.043
1
CTD-3137H5.1
hsa-miR-205-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594590
Biotype: antisense
Gene id: ENSG00000268199
Gene Name: CTD-3137H5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-250
0.043
2
RP11-159G9.5
hsa-miR-205-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000498458
Biotype: lincRNA
Gene id: ENSG00000229729
Gene Name: RP11-159G9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
613-633
0.043
5
XLOC_004398
hsa-miR-205-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009973
Biotype: transcript isomorph
Gene id: XLOC_004398
Gene Name: XLOC_004398
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3042-3069
0.031
1
7mer
1578-1595
0.006
1
6mer
82-100
0.004
1
6mer
353-373
0.002
0
RP11-337C18.8
hsa-miR-205-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440377
Biotype: antisense
Gene id: ENSG00000237188
Gene Name: RP11-337C18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1374-1391
0.033
Not Conserved
6mer
755-779
0.005
4
6mer
191-215
0.005
4
RP11-61A14.4
hsa-miR-205-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000501143
Biotype: lincRNA
Gene id: ENSG00000246777
Gene Name: RP11-61A14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2155-2173
0.040
2
6mer
745-765
0.003
1
XLOC_008710
hsa-miR-205-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018421
Biotype: transcript isomorph
Gene id: XLOC_008710
Gene Name: XLOC_008710
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
634-660
0.036
1
6mer
601-620
0.004
2
7mer
47-73
0.003
0
RP11-887P2.5
hsa-miR-205-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550287
Biotype: antisense
Gene id: ENSG00000258274
Gene Name: RP11-887P2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
109-129
0.043
4
RP11-285E9.6
hsa-miR-205-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582422
Biotype: lincRNA
Gene id: ENSG00000263718
Gene Name: RP11-285E9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
372-395
0.043
1
AF064858.6
hsa-miR-205-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000615324
Biotype: lincRNA
Gene id: ENSG00000205622
Gene Name: AF064858.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
42-58
0.043
0
XLOC_000939
hsa-miR-205-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001608
Biotype: transcript isomorph
Gene id: XLOC_000939
Gene Name: XLOC_000939
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
185-200
0.027
0
8mer
1714-1720
0.014
0
6mer
1666-1684
0.001
1
XLOC_008111
hsa-miR-205-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016946
Biotype: transcript isomorph
Gene id: XLOC_008111
Gene Name: XLOC_008111
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-71
0.017
1
7mer
599-613
0.011
0
8mer
1163-1178
0.007
1
6mer
440-457
0.006
4
6mer
1794-1805
0.002
0
RP5-857K21.3
hsa-miR-205-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000357876
Biotype: lincRNA
Gene id: ENSG00000239664
Gene Name: RP5-857K21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
298-319
0.043
Not Conserved
AC079779.6
hsa-miR-205-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436808
Biotype: lincRNA
Gene id: ENSG00000233684
Gene Name: AC079779.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-182
0.030
0
7mer
564-579
0.005
0
6mer
531-554
0.005
1
6mer
242-257
0.002
1
LOC101926935
hsa-miR-205-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3130-3142
0.025
0
6mer
5275-5298
0.008
0
6mer
2790-2812
0.005
0
6mer
2262-2288
0.004
0
6mer
1886-1910
0.001
Not Conserved
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