LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
XLOC_004539
hsa-miR-205-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010082
Biotype: transcript isomorph
Gene id: XLOC_004539
Gene Name: XLOC_004539
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
850-871
0.038
1
6mer
1738-1764
0.005
3
6mer
1777-1789
0.004
3
AC004692.4
hsa-miR-205-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000458680
Biotype: antisense
Gene id: ENSG00000228680
Gene Name: AC004692.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
214-235
0.047
1
THAP9-AS1
hsa-miR-205-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512932
Biotype: antisense
Gene id: ENSG00000251022
Gene Name: THAP9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
606-623
0.047
1
XLOC_006001
hsa-miR-205-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012869
Biotype: transcript isomorph
Gene id: XLOC_006001
Gene Name: XLOC_006001
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
226-249
0.035
9
7mer
749-768
0.009
1
6mer
72-98
0.003
0
ZBTB20-AS1
hsa-miR-205-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000487814
Biotype: antisense
Gene id: ENSG00000241560
Gene Name: ZBTB20-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-97
0.042
1
6mer
361-383
0.003
1
6mer
212-226
0.002
3
XLOC_000063
hsa-miR-205-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000848
Biotype: transcript isomorph
Gene id: XLOC_000063
Gene Name: XLOC_000063
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
206-225
0.047
1
XLOC_001680
hsa-miR-205-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003878
Biotype: transcript isomorph
Gene id: XLOC_001680
Gene Name: XLOC_001680
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
742-763
0.033
0
7mer
113-136
0.014
0
RP11-573G6.6
hsa-miR-205-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000566763
Biotype: lincRNA
Gene id: ENSG00000261671
Gene Name: RP11-573G6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
494-518
0.047
2
AC074289.1
hsa-miR-205-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451350
Biotype: antisense
Gene id: ENSG00000225889
Gene Name: AC074289.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
452-470
0.038
4
7mer
956-981
0.009
1
XLOC_011780
hsa-miR-205-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024252
Biotype: transcript isomorph
Gene id: XLOC_011780
Gene Name: XLOC_011780
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-69
0.047
9
XLOC_006415
hsa-miR-205-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013782
Biotype: transcript isomorph
Gene id: XLOC_006415
Gene Name: XLOC_006415
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
504-521
0.043
4
6mer
1200-1223
0.004
1
HAGLR
hsa-miR-205-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000549329
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-107
0.039
2
6mer
150-171
0.008
5
RP11-396C23.2
hsa-miR-205-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602806
Biotype: lincRNA
Gene id: ENSG00000225518
Gene Name: RP11-396C23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
415-432
0.042
0
6mer
446-467
0.002
0
6mer
260-276
0.002
1
AC004158.3
hsa-miR-205-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000624327
Biotype: lincRNA
Gene id: ENSG00000260664
Gene Name: AC004158.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-69
0.047
9
MIRLET7DHG
hsa-miR-205-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000416309
Biotype: lincRNA
Gene id: ENSG00000230262
Gene Name: MIRLET7DHG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
388-412
0.036
2
6mer
46-58
0.008
3
6mer
1093-1113
0.003
1
LINC00504
hsa-miR-205-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515031
Biotype: lincRNA
Gene id: ENSG00000248360
Gene Name: LINC00504
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
343-369
0.027
0
7mer
99-115
0.020
0
XLOC_012142
hsa-miR-205-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025162
Biotype: transcript isomorph
Gene id: XLOC_012142
Gene Name: XLOC_012142
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
637-657
0.047
1
XLOC_004205
hsa-miR-205-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008689
Biotype: transcript isomorph
Gene id: XLOC_004205
Gene Name: XLOC_004205
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
993-1008
0.038
2
9mer
2975-2998
0.005
Not Conserved
6mer
5271-5295
0.003
1
6mer
3870-3886
0.001
2
XLOC_011494
hsa-miR-205-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024132
Biotype: transcript isomorph
Gene id: XLOC_011494
Gene Name: XLOC_011494
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
981-1006
0.047
1
AC159540.1
hsa-miR-205-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000430893
Biotype: lincRNA
Gene id: ENSG00000230606
Gene Name: AC159540.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-457
0.034
0
6mer
213-234
0.007
1
6mer
146-170
0.006
0
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