LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
LOC100131626
hsa-miR-205-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_046369.1
Biotype: antisense
Gene id: NR_046369.1 (gene)
Gene Name: LOC100131626
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-103
0.030
1
7mer
266-291
0.019
5
LINC00649
hsa-miR-205-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000400353
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1620-1646
0.048
1
SIRPG-AS1
hsa-miR-205-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000456177
Biotype: antisense
Gene id: ENSG00000237914
Gene Name: SIRPG-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
395-415
0.024
1
7mer
2549-2575
0.012
0
7mer
791-810
0.007
1
6mer
2406-2428
0.003
0
6mer
2264-2289
0.002
1
HP08942
hsa-miR-205-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000456235
Biotype: lincRNA
Gene id: ENSG00000236819
Gene Name: HP08942
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
555-575
0.048
1
LINC01376
hsa-miR-205-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432142
Biotype: lincRNA
Gene id: ENSG00000236204
Gene Name: LINC01376
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
297-319
0.048
1
AC007179.1
hsa-miR-205-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415159
Biotype: lincRNA
Gene id: ENSG00000231815
Gene Name: AC007179.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-363
0.029
1
7mer
301-324
0.019
3
THAP9-AS1
hsa-miR-205-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504520
Biotype: antisense
Gene id: ENSG00000251022
Gene Name: THAP9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2004-2021
0.038
1
6mer
2683-2701
0.004
5
6mer
1922-1942
0.003
2
6mer
302-325
0.003
1
RP11-571I18.5
hsa-miR-205-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000595906
Biotype: antisense
Gene id: ENSG00000269506
Gene Name: RP11-571I18.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1406-1425
0.032
1
7mer
725-737
0.016
3
XLOC_002605
hsa-miR-205-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005508
Biotype: transcript isomorph
Gene id: XLOC_002605
Gene Name: XLOC_002605
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
24-51
0.048
0
C1orf132
hsa-miR-205-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2929-2948
0.011
3
8mer
8373-8395
0.008
0
7mer
11989-12003
0.005
1
6mer
247-273
0.005
2
7mer
8093-8116
0.004
1
7mer
5690-5713
0.003
1
7mer
3246-3273
0.002
1
6mer
9061-9081
0.002
1
7mer
2778-2797
0.002
1
6mer
6429-6445
0.001
3
6mer
1506-1527
0.001
4
7mer
11919-11942
0.001
1
6mer
10085-10108
0.001
0
6mer
11598-11611
0.001
0
6mer
4908-4930
0.001
1
6mer
6137-6161
0.001
0
6mer
11961-11977
0.001
0
RP11-166P13.4
hsa-miR-205-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576014
Biotype: antisense
Gene id: ENSG00000263089
Gene Name: RP11-166P13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1889-1915
0.022
0
7mer
3913-3932
0.012
1
6mer
4209-4227
0.004
2
6mer
118-139
0.003
2
7mer
2924-2945
0.002
0
6mer
2306-2329
0.001
1
6mer
1160-1179
0.001
1
6mer
2110-2130
0.001
2
XLOC_007735
hsa-miR-205-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016355
Biotype: transcript isomorph
Gene id: XLOC_007735
Gene Name: XLOC_007735
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
164-181
0.026
0
8mer
204-226
0.022
0
SPAG5-AS1
hsa-miR-205-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584675
Biotype: retained_intron
Gene id: ENSG00000227543
Gene Name: SPAG5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
436-462
0.044
9
6mer
1460-1484
0.003
0
MIR181A1HG
hsa-miR-205-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436880
Biotype: lincRNA
Gene id: ENSG00000229989
Gene Name: MIR181A1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1202-1217
0.022
5
7mer
1587-1597
0.022
8
6mer
2061-2083
0.004
0
AC016582.2
hsa-miR-205-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592640
Biotype: lincRNA
Gene id: ENSG00000225868
Gene Name: AC016582.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
574-599
0.029
5
7mer
1445-1456
0.016
3
6mer
357-375
0.002
0
XLOC_001148
hsa-miR-205-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000111
Biotype: transcript isomorph
Gene id: XLOC_001148
Gene Name: XLOC_001148
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1559-1569
0.022
8
8mer
1174-1189
0.022
5
6mer
2033-2055
0.004
0
CTD-2562J17.4
hsa-miR-205-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000603012
Biotype: lincRNA
Gene id: ENSG00000255136
Gene Name: CTD-2562J17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-297
0.048
1
AC019064.1
hsa-miR-205-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414796
Biotype: lincRNA
Gene id: ENSG00000237320
Gene Name: AC019064.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
195-202
0.047
1
LINC01376
hsa-miR-205-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449124
Biotype: lincRNA
Gene id: ENSG00000236204
Gene Name: LINC01376
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
479-501
0.047
1
AC003986.6
hsa-miR-205-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419944
Biotype: antisense
Gene id: ENSG00000232821
Gene Name: AC003986.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
226-249
0.035
9
7mer
749-768
0.009
1
6mer
72-98
0.003
0
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