LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
XLOC_013265
hsa-miR-205-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027227
Biotype: transcript isomorph
Gene id: XLOC_013265
Gene Name: XLOC_013265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
346-370
0.050
0
XLOC_005079
hsa-miR-205-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010552
Biotype: transcript isomorph
Gene id: XLOC_005079
Gene Name: XLOC_005079
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1186-1210
0.046
1
7mer
687-706
0.004
3
GNG12-AS1
hsa-miR-205-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413628
Biotype: antisense
Gene id: ENSG00000232284
Gene Name: GNG12-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-333
0.031
1
8mer
187-209
0.019
0
XLOC_008672
hsa-miR-205-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018859
Biotype: transcript isomorph
Gene id: XLOC_008672
Gene Name: XLOC_008672
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8-33
0.005
0
7mer
119-144
0.005
0
7mer
415-440
0.004
1
7mer
161-181
0.004
0
7mer
50-70
0.004
0
7mer
457-477
0.004
1
7mer
87-107
0.004
0
7mer
197-218
0.004
0
7mer
309-329
0.003
1
7mer
341-366
0.003
1
7mer
383-403
0.003
1
7mer
235-255
0.003
0
7mer
272-292
0.003
0
XXbac-BPG254F23.7
hsa-miR-205-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000585372
Biotype: retained_intron
Gene id: ENSG00000232080
Gene Name: XXbac-BPG254F23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
503-529
0.049
0
RP11-130F10.1
hsa-miR-205-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507023
Biotype: antisense
Gene id: ENSG00000250131
Gene Name: RP11-130F10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
605-630
0.049
1
XLOC_011880
hsa-miR-205-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024586
Biotype: transcript isomorph
Gene id: XLOC_011880
Gene Name: XLOC_011880
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3448-3469
0.029
1
7mer
616-642
0.014
1
6mer
3439-3456
0.005
0
6mer
2451-2475
0.001
1
RP11-374M1.2
hsa-miR-205-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000612999
Biotype: retained_intron
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
220-247
0.049
1
MALAT1
hsa-miR-205-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8248-8266
0.010
1
8mer
1648-1662
0.008
1
7mer
2773-2798
0.005
3
7mer
2490-2514
0.005
0
7mer
6704-6727
0.004
1
6mer
4574-4599
0.003
7
6mer
80-104
0.002
0
6mer
3848-3868
0.002
6
6mer
7582-7604
0.002
0
6mer
4394-4411
0.002
2
6mer
1486-1512
0.002
1
6mer
5718-5736
0.001
0
6mer
7685-7703
0.001
6
6mer
1696-1721
0.001
1
7mer
2870-2889
0.001
Not Conserved
6mer
2852-2865
0.000
2
RP11-357D18.1
hsa-miR-205-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508512
Biotype: lincRNA
Gene id: ENSG00000250978
Gene Name: RP11-357D18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
383-399
0.049
1
RP11-374M1.2
hsa-miR-205-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443347
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-250
0.049
1
RNF144A-AS1
hsa-miR-205-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418970
Biotype: antisense
Gene id: ENSG00000228203
Gene Name: RNF144A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1564-1584
0.042
3
7mer
1780-1794
0.006
0
LOC100131626
hsa-miR-205-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_046370.1
Biotype: antisense
Gene id: NR_046370.1 (gene)
Gene Name: LOC100131626
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-103
0.030
1
7mer
266-291
0.019
5
LINC01376
hsa-miR-205-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418165
Biotype: lincRNA
Gene id: ENSG00000236204
Gene Name: LINC01376
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
296-318
0.049
1
XLOC_000847
hsa-miR-205-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000080
Biotype: transcript isomorph
Gene id: XLOC_000847
Gene Name: XLOC_000847
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1569-1596
0.026
1
8mer
1648-1668
0.023
1
RP11-378I13.1
hsa-miR-205-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425435
Biotype: antisense
Gene id: ENSG00000229913
Gene Name: RP11-378I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1578-1605
0.026
1
8mer
1657-1677
0.023
1
AC034110.1
hsa-miR-205-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000611889
Biotype: lincRNA
Gene id: ENSG00000276397
Gene Name: AC034110.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2256-2278
0.024
0
8mer
1616-1636
0.020
1
8mer
845-864
0.005
0
RP11-356I2.4
hsa-miR-205-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606998
Biotype: antisense
Gene id: ENSG00000237499
Gene Name: RP11-356I2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-31
0.049
0
XLOC_013917
hsa-miR-205-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029002
Biotype: transcript isomorph
Gene id: XLOC_013917
Gene Name: XLOC_013917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
578-604
0.049
0
RP11-818C3.1
hsa-miR-205-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508799
Biotype: lincRNA
Gene id: ENSG00000250024
Gene Name: RP11-818C3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
284-311
0.048
0
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