LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
CTC-353G13.1
hsa-miR-205-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523050
Biotype: antisense
Gene id: ENSG00000253660
Gene Name: CTC-353G13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
499-515
0.036
4
7mer
176-188
0.015
0
MESTIT1
hsa-miR-205-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_004382.1
Biotype: antisense
Gene id: NR_004382.1 (gene)
Gene Name: MESTIT1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2884-2900
0.019
4
7mer
246-264
0.017
2
6mer
2833-2848
0.005
3
7mer
2636-2661
0.005
1
6mer
1660-1682
0.003
4
6mer
1502-1519
0.001
1
6mer
2757-2772
0.001
Not Conserved
XLOC_007166
hsa-miR-205-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015109
Biotype: transcript isomorph
Gene id: XLOC_007166
Gene Name: XLOC_007166
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4413-4438
0.043
3
7mer
2206-2220
0.004
1
6mer
234-253
0.003
1
6mer
1225-1244
0.001
0
XLOC_001704
hsa-miR-205-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003029
Biotype: transcript isomorph
Gene id: XLOC_001704
Gene Name: XLOC_001704
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
382-404
0.040
0
7mer
361-383
0.009
1
6mer
198-219
0.001
0
C5orf64
hsa-miR-205-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000313303
Biotype: processed_transcript
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2706-2713
0.041
1
6mer
772-791
0.006
7
7mer
373-398
0.004
0
XLOC_009322
hsa-miR-205-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019527
Biotype: transcript isomorph
Gene id: XLOC_009322
Gene Name: XLOC_009322
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
938-961
0.036
0
7mer
477-495
0.006
1
6mer
881-890
0.005
1
6mer
36-55
0.003
2
RNF144A-AS1
hsa-miR-205-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_033997.1
Biotype: antisense
Gene id: NR_033997.1 (gene)
Gene Name: RNF144A-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1565-1585
0.044
3
7mer
1781-1795
0.007
0
AC078941.1
hsa-miR-205-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447453
Biotype: lincRNA
Gene id: ENSG00000236780
Gene Name: AC078941.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
376-395
0.044
1
6mer
10-34
0.006
2
RP11-374M1.2
hsa-miR-205-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000399894
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
194-221
0.050
1
RP11-32B5.8
hsa-miR-205-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000594169
Biotype: lincRNA
Gene id: ENSG00000268531
Gene Name: RP11-32B5.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1826-1847
0.019
1
7mer
63-81
0.015
0
6mer
2146-2165
0.012
1
6mer
413-431
0.003
0
6mer
1311-1328
0.001
Not Conserved
RP11-127O4.2
hsa-miR-205-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000450054
Biotype: lincRNA
Gene id: ENSG00000237761
Gene Name: RP11-127O4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
339-363
0.050
1
XLOC_010647
hsa-miR-205-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022046
Biotype: transcript isomorph
Gene id: XLOC_010647
Gene Name: XLOC_010647
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-226
0.050
1
XXbac-BPG254F23.7
hsa-miR-205-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000448198
Biotype: lincRNA
Gene id: ENSG00000232080
Gene Name: XXbac-BPG254F23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-260
0.050
0
XLOC_005763
hsa-miR-205-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012210
Biotype: transcript isomorph
Gene id: XLOC_005763
Gene Name: XLOC_005763
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
168-189
0.046
2
6mer
458-484
0.004
3
LINC00702
hsa-miR-205-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000418372
Biotype: lincRNA
Gene id: ENSG00000233117
Gene Name: LINC00702
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
115-137
0.050
1
XLOC_004980
hsa-miR-205-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009772
Biotype: transcript isomorph
Gene id: XLOC_004980
Gene Name: XLOC_004980
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-356
0.050
1
XXbac-BPG254F23.7
hsa-miR-205-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000621553
Biotype: lincRNA
Gene id: ENSG00000232080
Gene Name: XXbac-BPG254F23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-271
0.050
0
IGBP1-AS2
hsa-miR-205-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000403371
Biotype: antisense
Gene id: ENSG00000220925
Gene Name: IGBP1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
226-248
0.050
5
RP11-335L23.5
hsa-miR-205-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610012
Biotype: lincRNA
Gene id: ENSG00000272784
Gene Name: RP11-335L23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
595-614
0.040
0
6mer
523-543
0.010
6
RP11-104J23.1
hsa-miR-205-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000617328
Biotype: antisense
Gene id: ENSG00000275944
Gene Name: RP11-104J23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-265
0.046
0
6mer
920-937
0.004
0
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