LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
C5orf64
hsa-miR-205-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505642
Biotype: lincRNA
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2781-2788
0.041
1
6mer
847-866
0.005
7
7mer
448-473
0.004
0
6mer
14-30
0.002
1
XLOC_010472
hsa-miR-205-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021502
Biotype: transcript isomorph
Gene id: XLOC_010472
Gene Name: XLOC_010472
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2936-2961
0.046
4
6mer
2234-2254
0.003
0
6mer
125-149
0.002
4
6mer
1239-1258
0.002
2
XLOC_009436
hsa-miR-205-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019634
Biotype: transcript isomorph
Gene id: XLOC_009436
Gene Name: XLOC_009436
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
262-281
0.044
1
6mer
403-427
0.005
2
6mer
479-494
0.002
0
RP11-1094M14.5
hsa-miR-205-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592908
Biotype: sense_intronic
Gene id: ENSG00000267074
Gene Name: RP11-1094M14.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
248-273
0.052
1
SOX21-AS1
hsa-miR-205-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_046514.1
Biotype: lincRNA
Gene id: NR_046514.1 (gene)
Gene Name: SOX21-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2936-2961
0.046
4
6mer
2234-2254
0.003
0
6mer
125-149
0.002
4
6mer
1239-1258
0.002
2
RP3-468B3.2
hsa-miR-205-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000530000
Biotype: lincRNA
Gene id: ENSG00000233183
Gene Name: RP3-468B3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
409-432
0.034
1
8mer
6129-6152
0.009
1
6mer
6059-6072
0.003
2
7mer
615-636
0.002
0
6mer
6382-6405
0.002
1
6mer
3591-3617
0.002
2
XLOC_004540
hsa-miR-205-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010083
Biotype: transcript isomorph
Gene id: XLOC_004540
Gene Name: XLOC_004540
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-269
0.052
3
RP11-111M22.5
hsa-miR-205-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000607673
Biotype: lincRNA
Gene id: ENSG00000271757
Gene Name: RP11-111M22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
296-318
0.051
3
XLOC_007352
hsa-miR-205-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015976
Biotype: transcript isomorph
Gene id: XLOC_007352
Gene Name: XLOC_007352
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1017-1037
0.030
0
8mer
2966-2984
0.015
0
6mer
3796-3809
0.004
1
6mer
1310-1326
0.001
1
6mer
1565-1579
0.001
Not Conserved
XLOC_012925
hsa-miR-205-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026823
Biotype: transcript isomorph
Gene id: XLOC_012925
Gene Name: XLOC_012925
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
692-716
0.021
2
7mer
228-254
0.015
2
7mer
187-203
0.011
1
6mer
793-819
0.002
0
6mer
748-768
0.002
1
ANKRD62P1-PARP4P3
hsa-miR-205-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000456726
Biotype: processed_transcript
Gene id: ENSG00000189295
Gene Name: ANKRD62P1-PARP4P3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
823-846
0.035
0
7mer
1078-1093
0.013
0
6mer
311-320
0.004
Not Conserved
HAGLR
hsa-miR-205-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000546798
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-107
0.042
2
6mer
150-171
0.009
5
HAGLR
hsa-miR-205-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447538
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-113
0.042
2
6mer
156-177
0.010
5
THAP9-AS1
hsa-miR-205-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504718
Biotype: antisense
Gene id: ENSG00000251022
Gene Name: THAP9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
303-320
0.051
1
RP11-33A14.1
hsa-miR-205-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000439810
Biotype: lincRNA
Gene id: ENSG00000223930
Gene Name: RP11-33A14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-495
0.051
6
RP11-278H7.4
hsa-miR-205-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441338
Biotype: lincRNA
Gene id: ENSG00000229960
Gene Name: RP11-278H7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
414-434
0.051
1
THAP9-AS1
hsa-miR-205-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513581
Biotype: antisense
Gene id: ENSG00000251022
Gene Name: THAP9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
308-325
0.051
1
RP11-661P17.1
hsa-miR-205-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_110106.1
Biotype: lincRNA
Gene id: NR_110106.1 (gene)
Gene Name: RP11-661P17.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
521-546
0.026
0
8mer
916-943
0.022
1
6mer
1145-1169
0.002
0
RP11-661P17.1
hsa-miR-205-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000554333
Biotype: lincRNA
Gene id: ENSG00000258551
Gene Name: RP11-661P17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
523-548
0.026
0
8mer
918-945
0.022
1
6mer
1147-1171
0.002
0
XLOC_011353
hsa-miR-205-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023240
Biotype: transcript isomorph
Gene id: XLOC_011353
Gene Name: XLOC_011353
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
521-546
0.026
0
8mer
916-943
0.022
1
6mer
1145-1169
0.002
0
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