LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
RP11-96C23.14
hsa-miR-205-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444180
Biotype: processed_transcript
Gene id: ENSG00000272508
Gene Name: RP11-96C23.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1075-1100
0.042
1
7mer
990-1010
0.012
6
CNTFR-AS1
hsa-miR-205-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000454187
Biotype: antisense
Gene id: ENSG00000237159
Gene Name: CNTFR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
139-146
0.054
0
RP11-451H23.3
hsa-miR-205-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513535
Biotype: lincRNA
Gene id: ENSG00000248717
Gene Name: RP11-451H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-464
0.041
0
7mer
62-80
0.008
0
6mer
219-240
0.004
0
RP11-461O7.1
hsa-miR-205-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565155
Biotype: lincRNA
Gene id: ENSG00000246379
Gene Name: RP11-461O7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-316
0.053
2
RP1-136B1.1
hsa-miR-205-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606542
Biotype: lincRNA
Gene id: ENSG00000272465
Gene Name: RP1-136B1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
481-503
0.053
1
XLOC_013862
hsa-miR-205-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028792
Biotype: transcript isomorph
Gene id: XLOC_013862
Gene Name: XLOC_013862
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
393-416
0.053
2
RP11-436A7.1
hsa-miR-205-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509096
Biotype: lincRNA
Gene id: ENSG00000250150
Gene Name: RP11-436A7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-90
0.030
1
7mer
170-190
0.023
1
XLOC_004149
hsa-miR-205-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007443
Biotype: transcript isomorph
Gene id: XLOC_004149
Gene Name: XLOC_004149
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-88
0.030
1
7mer
168-188
0.023
1
CTD-2135D7.4
hsa-miR-205-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000575767
Biotype: lincRNA
Gene id: ENSG00000261856
Gene Name: CTD-2135D7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4-29
0.049
1
6mer
94-116
0.004
0
RP5-1024G6.7
hsa-miR-205-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569869
Biotype: antisense
Gene id: ENSG00000259818
Gene Name: RP5-1024G6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3551-3567
0.043
1
7mer
1806-1831
0.004
1
6mer
2848-2864
0.004
1
6mer
3056-3074
0.002
0
XLOC_008407
hsa-miR-205-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018132
Biotype: transcript isomorph
Gene id: XLOC_008407
Gene Name: XLOC_008407
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-46
0.053
5
RP11-33A14.1
hsa-miR-205-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000418585
Biotype: lincRNA
Gene id: ENSG00000223930
Gene Name: RP11-33A14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
573-597
0.053
6
XLOC_006677
hsa-miR-205-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014460
Biotype: transcript isomorph
Gene id: XLOC_006677
Gene Name: XLOC_006677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1577-1603
0.006
0
7mer
1632-1658
0.005
0
7mer
1659-1684
0.005
0
7mer
1418-1444
0.005
0
7mer
1528-1554
0.004
0
8mer
1264-1290
0.004
0
7mer
1500-1523
0.004
0
7mer
1313-1338
0.004
0
7mer
982-1009
0.003
0
7mer
1390-1416
0.003
0
7mer
1066-1089
0.002
0
7mer
1208-1234
0.002
0
7mer
1473-1499
0.002
Not Conserved
7mer
1124-1149
0.002
1
6mer
1369-1389
0.001
0
TSIX
hsa-miR-205-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9767-9792
0.006
0
7mer
21773-21798
0.004
1
7mer
26710-26734
0.004
1
7mer
2230-2247
0.004
2
7mer
14833-14857
0.004
Not Conserved
7mer
1611-1632
0.004
1
7mer
16255-16279
0.004
0
7mer
11240-11260
0.003
Not Conserved
6mer
19500-19519
0.002
1
6mer
22770-22784
0.002
1
7mer
16350-16375
0.002
0
6mer
23312-23328
0.002
1
6mer
23163-23182
0.001
1
6mer
2046-2065
0.001
Not Conserved
6mer
13205-13227
0.001
Not Conserved
6mer
17038-17058
0.001
0
6mer
4395-4422
0.001
2
6mer
13567-13590
0.001
Not Conserved
6mer
24355-24365
0.001
Not Conserved
6mer
9906-9931
0.001
0
6mer
28671-28685
0.001
0
6mer
9809-9835
0.001
0
6mer
14172-14198
0.001
Not Conserved
6mer
11817-11843
0.001
Not Conserved
6mer
11718-11743
0.001
Not Conserved
RP11-1008C21.1
hsa-miR-205-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557883
Biotype: lincRNA
Gene id: ENSG00000259225
Gene Name: RP11-1008C21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
481-498
0.045
1
6mer
606-622
0.008
1
RP1-309I22.2
hsa-miR-205-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
111-121
0.010
1
7mer
12803-12829
0.007
11
7mer
7695-7719
0.003
1
6mer
26148-26171
0.003
11
7mer
18619-18646
0.002
2
6mer
9297-9317
0.002
4
6mer
10941-10964
0.002
5
6mer
18087-18113
0.002
1
6mer
5720-5735
0.001
3
6mer
26480-26502
0.001
1
6mer
9041-9055
0.001
1
7mer
18186-18207
0.001
Not Conserved
6mer
24699-24721
0.001
1
6mer
9915-9927
0.001
1
6mer
21606-21629
0.001
1
6mer
23251-23268
0.001
2
6mer
19568-19587
0.001
1
6mer
17739-17754
0.001
2
6mer
13460-13480
0.001
1
7mer
11095-11114
0.001
Not Conserved
6mer
24894-24912
0.001
1
6mer
18748-18765
0.001
1
6mer
2981-3003
0.001
0
7mer
3043-3065
0.001
Not Conserved
6mer
10759-10779
0.001
1
6mer
2611-2627
0.001
2
6mer
1536-1551
0.001
1
6mer
11000-11018
0.001
0
6mer
16108-16123
0.001
1
6mer
21438-21460
0.000
0
6mer
19677-19700
0.000
1
XLOC_010602
hsa-miR-205-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022278
Biotype: transcript isomorph
Gene id: XLOC_010602
Gene Name: XLOC_010602
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-256
0.045
0
7mer
402-417
0.007
1
SEPT5-GP1BB
hsa-miR-205-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_037612.1
Biotype: sense
Gene id: NR_037612.1 (gene)
Gene Name: SEPT5-GP1BB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1068-1094
0.020
7
7mer
551-577
0.017
9
7mer
637-659
0.009
9
7mer
749-767
0.006
6
AC079466.1
hsa-miR-205-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3615-3639
0.024
1
6mer
362-383
0.011
1
6mer
1023-1040
0.006
1
6mer
109-124
0.006
0
6mer
3009-3027
0.005
1
RP11-281H11.1
hsa-miR-205-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518926
Biotype: lincRNA
Gene id: ENSG00000254007
Gene Name: RP11-281H11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
632-652
0.052
0
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