LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
SLC14A2-AS1
hsa-miR-205-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586330
Biotype: antisense
Gene id: ENSG00000267097
Gene Name: SLC14A2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
403-421
0.055
5
ANKRD62P1-PARP4P3
hsa-miR-205-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000457060
Biotype: lincRNA
Gene id: ENSG00000189295
Gene Name: ANKRD62P1-PARP4P3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-356
0.055
0
RP11-374M1.2
hsa-miR-205-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439760
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-61
0.055
1
RP11-648K4.2
hsa-miR-205-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560439
Biotype: lincRNA
Gene id: ENSG00000259560
Gene Name: RP11-648K4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
203-229
0.039
2
7mer
111-137
0.016
1
XLOC_004950
hsa-miR-205-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010434
Biotype: transcript isomorph
Gene id: XLOC_004950
Gene Name: XLOC_004950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
423-443
0.047
1
6mer
250-269
0.005
2
6mer
698-716
0.003
0
CTC-137K3.1
hsa-miR-205-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602328
Biotype: sense_intronic
Gene id: ENSG00000270137
Gene Name: CTC-137K3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-143
0.055
1
RP11-33A14.1
hsa-miR-205-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000411727
Biotype: lincRNA
Gene id: ENSG00000223930
Gene Name: RP11-33A14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2013-2037
0.052
6
6mer
48-66
0.003
0
PCAT19
hsa-miR-205-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595063
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
509-534
0.041
1
6mer
201-218
0.014
1
RP11-143G3.1
hsa-miR-205-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000414071
Biotype: antisense
Gene id: ENSG00000234712
Gene Name: RP11-143G3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
292-319
0.055
0
LINC00971
hsa-miR-205-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000484892
Biotype: lincRNA
Gene id: ENSG00000242641
Gene Name: LINC00971
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
152-179
0.026
0
9mer
1666-1673
0.016
1
8mer
2672-2695
0.012
0
6mer
3626-3650
0.001
1
XLOC_013812
hsa-miR-205-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028452
Biotype: transcript isomorph
Gene id: XLOC_013812
Gene Name: XLOC_013812
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-152
0.029
1
7mer
310-328
0.010
1
7mer
1594-1612
0.007
0
7mer
1096-1118
0.005
2
6mer
297-318
0.004
2
CTD-3187F8.2
hsa-miR-205-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597569
Biotype: antisense
Gene id: ENSG00000268595
Gene Name: CTD-3187F8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
37-51
0.054
1
XLOC_005183
hsa-miR-205-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011704
Biotype: transcript isomorph
Gene id: XLOC_005183
Gene Name: XLOC_005183
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195-219
0.028
1
7mer
190-203
0.017
2
7mer
15-40
0.009
0
RP11-323I1.1
hsa-miR-205-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456240
Biotype: lincRNA
Gene id: ENSG00000228255
Gene Name: RP11-323I1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
257-282
0.054
1
RP3-449H6.1
hsa-miR-205-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000436113
Biotype: lincRNA
Gene id: ENSG00000237530
Gene Name: RP3-449H6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
418-437
0.053
1
6mer
136-158
0.001
Not Conserved
CTD-2201I18.1
hsa-miR-205-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503007
Biotype: antisense
Gene id: ENSG00000249825
Gene Name: CTD-2201I18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-429
0.041
1
8mer
833-855
0.013
Not Conserved
RP11-33A14.1
hsa-miR-205-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000417383
Biotype: lincRNA
Gene id: ENSG00000223930
Gene Name: RP11-33A14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
501-525
0.054
6
XLOC_010390
hsa-miR-205-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021490
Biotype: transcript isomorph
Gene id: XLOC_010390
Gene Name: XLOC_010390
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
175-201
0.043
1
8mer
2321-2347
0.006
1
7mer
2089-2111
0.004
2
6mer
1322-1347
0.001
0
RP11-212D3.4
hsa-miR-205-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000413763
Biotype: lincRNA
Gene id: ENSG00000226854
Gene Name: RP11-212D3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-38
0.043
0
6mer
74-98
0.011
0
RP11-354P11.8
hsa-miR-205-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591928
Biotype: antisense
Gene id: ENSG00000266987
Gene Name: RP11-354P11.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-167
0.054
3
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