LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-205-5p


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Gene
miRNA
Score
DIANA Links
CARS-AS1
hsa-miR-205-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499962
Biotype: antisense
Gene id: ENSG00000247473
Gene Name: CARS-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2389-2406
0.049
2
7mer
1501-1514
0.006
1
6mer
1877-1894
0.003
1
6mer
1591-1616
0.001
1
SNHG16
hsa-miR-205-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587838
Biotype: lincRNA
Gene id: ENSG00000163597
Gene Name: SNHG16
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
683-700
0.059
1
VENTXP1
hsa-miR-205-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000569334
Biotype: lincRNA
Gene id: ENSG00000259849
Gene Name: VENTXP1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-208
0.026
1
8mer
355-369
0.023
1
7mer
1176-1201
0.011
2
LINC00410
hsa-miR-205-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000419272
Biotype: lincRNA
Gene id: ENSG00000231674
Gene Name: LINC00410
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1328-1353
0.042
0
7mer
21-43
0.013
1
6mer
476-494
0.002
1
6mer
1037-1057
0.002
1
LINC00347
hsa-miR-205-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000601480
Biotype: lincRNA
Gene id: ENSG00000236678
Gene Name: LINC00347
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
729-750
0.056
8
6mer
263-290
0.003
1
CTC-453G23.8
hsa-miR-205-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595201
Biotype: antisense
Gene id: ENSG00000268583
Gene Name: CTC-453G23.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
334-361
0.040
0
8mer
210-227
0.018
1
XLOC_009440
hsa-miR-205-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019636
Biotype: transcript isomorph
Gene id: XLOC_009440
Gene Name: XLOC_009440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
144-164
0.059
0
XLOC_008753
hsa-miR-205-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018456
Biotype: transcript isomorph
Gene id: XLOC_008753
Gene Name: XLOC_008753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
121-141
0.059
Not Conserved
THAP9-AS1
hsa-miR-205-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509007
Biotype: antisense
Gene id: ENSG00000251022
Gene Name: THAP9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
201-218
0.059
1
ERVK13-1
hsa-miR-205-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568395
Biotype: lincRNA
Gene id: ENSG00000260565
Gene Name: ERVK13-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5298-5319
0.048
1
6mer
348-368
0.004
Not Conserved
6mer
5510-5537
0.003
Not Conserved
6mer
4222-4246
0.001
1
6mer
3659-3671
0.001
0
NIFK-AS1
hsa-miR-205-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439321
Biotype: antisense
Gene id: ENSG00000236859
Gene Name: NIFK-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
18-39
0.056
2
6mer
355-379
0.002
1
RP11-396C23.2
hsa-miR-205-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412855
Biotype: lincRNA
Gene id: ENSG00000225518
Gene Name: RP11-396C23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
16-34
0.055
0
6mer
48-69
0.003
0
THAP9-AS1
hsa-miR-205-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511271
Biotype: antisense
Gene id: ENSG00000251022
Gene Name: THAP9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
144-161
0.058
1
RP11-523G9.3
hsa-miR-205-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608133
Biotype: lincRNA
Gene id: ENSG00000273193
Gene Name: RP11-523G9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
662-679
0.058
7
XLOC_001635
hsa-miR-205-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003823
Biotype: transcript isomorph
Gene id: XLOC_001635
Gene Name: XLOC_001635
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2736-2754
0.054
3
6mer
571-595
0.003
2
6mer
1563-1583
0.001
Not Conserved
RP11-67L3.4
hsa-miR-205-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436033
Biotype: antisense
Gene id: ENSG00000233203
Gene Name: RP11-67L3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
153-177
0.058
1
ERVK13-1
hsa-miR-205-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564160
Biotype: lincRNA
Gene id: ENSG00000260565
Gene Name: ERVK13-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
124-145
0.054
1
6mer
912-939
0.003
Not Conserved
RP11-879F14.2
hsa-miR-205-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586949
Biotype: lincRNA
Gene id: ENSG00000267279
Gene Name: RP11-879F14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
359-380
0.057
3
RP5-898J17.1
hsa-miR-205-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435311
Biotype: lincRNA
Gene id: ENSG00000231987
Gene Name: RP5-898J17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
879-897
0.022
1
9mer
1568-1585
0.020
0
7mer
1892-1909
0.010
1
6mer
1929-1947
0.004
1
6mer
608-623
0.002
0
LL22NC03-86G7.1
hsa-miR-205-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-205-5p
Sequence: uccuucauuccaccggagucug
MirBase ID: MIMAT0000266
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28858-28876
0.011
11
8mer
4976-4998
0.005
0
8mer
31074-31097
0.003
2
7mer
23000-23023
0.003
5
8mer
29073-29095
0.002
0
7mer
22909-22932
0.002
0
6mer
31057-31082
0.002
1
7mer
28650-28676
0.002
2
6mer
31272-31288
0.002
1
6mer
3951-3973
0.001
1
6mer
1887-1908
0.001
1
6mer
15607-15632
0.001
1
6mer
17895-17922
0.001
1
6mer
17120-17147
0.001
1
6mer
14171-14193
0.001
1
6mer
5646-5669
0.001
1
6mer
11482-11507
0.001
0
6mer
7226-7252
0.001
1
7mer
24032-24048
0.001
0
6mer
31504-31529
0.001
1
6mer
8267-8293
0.001
2
6mer
23225-23250
0.001
1
6mer
3317-3342
0.001
2
6mer
27159-27186
0.001
1
6mer
8150-8176
0.001
1
6mer
26005-26019
0.001
1
6mer
25609-25629
0.001
0
7mer
15765-15790
0.001
0
6mer
2101-2121
0.001
0
6mer
25235-25259
0.001
0
6mer
9646-9662
0.001
1
6mer
12544-12565
0.001
2
6mer
2797-2812
0.001
0
6mer
12267-12292
0.001
1
6mer
13407-13428
0.001
0
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