LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
XLOC_007078
hsa-miR-200c-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014998
Biotype: transcript isomorph
Gene id: XLOC_007078
Gene Name: XLOC_007078
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
408-430
0.030
1
6mer
955-981
0.014
1
RP11-744K17.1
hsa-miR-200c-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000562182
Biotype: lincRNA
Gene id: ENSG00000261020
Gene Name: RP11-744K17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4164-4181
0.038
0
6mer
1199-1213
0.005
1
6mer
3514-3529
0.001
Not Conserved
XLOC_013995
hsa-miR-200c-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029073
Biotype: transcript isomorph
Gene id: XLOC_013995
Gene Name: XLOC_013995
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
432-450
0.022
0
8mer
1692-1715
0.015
0
7mer
2016-2039
0.004
Not Conserved
6mer
2296-2321
0.002
0
6mer
2934-2954
0.002
0
RASAL2-AS1
hsa-miR-200c-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452867
Biotype: lincRNA
Gene id: ENSG00000224687
Gene Name: RASAL2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-58
0.044
3
PCAT19
hsa-miR-200c-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588495
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
531-545
0.028
1
8mer
3096-3115
0.016
Not Conserved
BRE-AS1
hsa-miR-200c-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_028308.1
Biotype: sense
Gene id: NR_028308.1 (gene)
Gene Name: BRE-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
256-273
0.028
1
7mer
190-203
0.012
1
6mer
351-375
0.005
1
XLOC_006242
hsa-miR-200c-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014209
Biotype: transcript isomorph
Gene id: XLOC_006242
Gene Name: XLOC_006242
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
577-601
0.015
0
6mer
320-344
0.012
1
6mer
811-817
0.010
1
6mer
323-350
0.007
1
FAM138E
hsa-miR-200c-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559252
Biotype: lincRNA
Gene id: ENSG00000248893
Gene Name: FAM138E
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
549-567
0.044
2
XLOC_013866
hsa-miR-200c-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028969
Biotype: transcript isomorph
Gene id: XLOC_013866
Gene Name: XLOC_013866
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3171-3191
0.016
1
7mer
381-403
0.010
0
7mer
3405-3427
0.006
2
6mer
346-365
0.006
2
6mer
1329-1342
0.002
1
6mer
2477-2498
0.002
1
6mer
2015-2035
0.001
0
DLX6-AS1
hsa-miR-200c-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1136-1157
0.014
3
9mer
5055-5072
0.010
0
7mer
996-1012
0.005
4
7mer
11165-11192
0.005
1
6mer
14341-14354
0.003
2
6mer
10976-11002
0.002
1
6mer
9008-9021
0.002
4
6mer
7931-7956
0.001
1
6mer
14234-14256
0.001
1
6mer
7182-7200
0.001
Not Conserved
FLJ22763
hsa-miR-200c-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000622536
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-188
0.044
4
RP11-314B1.2
hsa-miR-200c-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609089
Biotype: lincRNA
Gene id: ENSG00000273301
Gene Name: RP11-314B1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-354
0.028
0
7mer
1455-1470
0.010
9
7mer
3215-3234
0.006
1
RP11-803D5.4
hsa-miR-200c-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603052
Biotype: lincRNA
Gene id: ENSG00000270190
Gene Name: RP11-803D5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
517-543
0.025
2
7mer
508-527
0.018
0
RP11-99H20.1
hsa-miR-200c-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520155
Biotype: lincRNA
Gene id: ENSG00000254123
Gene Name: RP11-99H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-86
0.035
1
7mer
441-464
0.009
1
AC005498.4
hsa-miR-200c-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592125
Biotype: lincRNA
Gene id: ENSG00000267224
Gene Name: AC005498.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267-289
0.044
1
RP11-250B2.6
hsa-miR-200c-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606629
Biotype: lincRNA
Gene id: ENSG00000272129
Gene Name: RP11-250B2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1341-1361
0.022
0
7mer
1111-1130
0.008
1
6mer
1294-1316
0.005
0
6mer
202-226
0.004
Not Conserved
6mer
1093-1112
0.004
0
MUC19
hsa-miR-200c-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000474954
Biotype: retained_intron
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-115
0.016
1
7mer
228-251
0.009
0
7mer
543-554
0.008
1
7mer
2308-2327
0.005
1
7mer
2756-2767
0.004
0
6mer
1065-1087
0.002
0
DYX1C1-CCPG1
hsa-miR-200c-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565113
Biotype: processed_transcript
Gene id: ENSG00000261771
Gene Name: DYX1C1-CCPG1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3845-3866
0.020
3
7mer
2470-2491
0.007
6
7mer
3873-3890
0.005
2
6mer
359-385
0.005
4
6mer
239-264
0.003
1
6mer
1233-1240
0.002
2
6mer
3820-3841
0.001
4
KB-1440D3.14
hsa-miR-200c-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609038
Biotype: lincRNA
Gene id: ENSG00000273342
Gene Name: KB-1440D3.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
316-335
0.043
0
EGFLAM-AS2
hsa-miR-200c-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514377
Biotype: antisense
Gene id: ENSG00000248572
Gene Name: EGFLAM-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-445
0.043
1
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