LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
XLOC_005615
hsa-miR-200c-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012086
Biotype: transcript isomorph
Gene id: XLOC_005615
Gene Name: XLOC_005615
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-112
0.026
2
7mer
103-130
0.022
2
RP11-760D2.1
hsa-miR-200c-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436042
Biotype: lincRNA
Gene id: ENSG00000225488
Gene Name: RP11-760D2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-241
0.047
0
LL22NC03-22D1.1
hsa-miR-200c-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21432-21450
0.025
1
7mer
3335-3355
0.004
Not Conserved
7mer
16747-16773
0.004
0
6mer
28712-28732
0.003
0
7mer
21529-21552
0.003
1
7mer
10251-10275
0.002
0
6mer
8355-8371
0.002
3
6mer
12256-12270
0.002
1
6mer
9096-9113
0.001
Not Conserved
6mer
11858-11874
0.001
0
6mer
11947-11964
0.001
0
CTA-796E4.5
hsa-miR-200c-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31624-31651
0.023
2
7mer
2813-2828
0.007
1
7mer
10035-10055
0.006
1
6mer
1547-1563
0.002
1
6mer
24936-24961
0.002
1
6mer
12080-12103
0.002
0
6mer
22154-22180
0.002
2
6mer
30545-30564
0.002
1
6mer
21047-21073
0.001
0
6mer
18573-18599
0.001
0
LINC01142
hsa-miR-200c-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440404
Biotype: lincRNA
Gene id: ENSG00000224286
Gene Name: LINC01142
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5-25
0.018
4
7mer
76-91
0.017
2
7mer
713-731
0.012
6
XLOC_001195
hsa-miR-200c-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001810
Biotype: transcript isomorph
Gene id: XLOC_001195
Gene Name: XLOC_001195
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-47
0.035
1
7mer
7253-7277
0.004
1
6mer
449-470
0.004
1
6mer
7625-7648
0.002
1
6mer
6151-6173
0.002
1
THRB-AS1
hsa-miR-200c-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609230
Biotype: lincRNA
Gene id: ENSG00000228791
Gene Name: THRB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-77
0.047
1
DNM3OS
hsa-miR-200c-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038397.2
Biotype: antisense
Gene id: NR_038397.2 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2400-2420
0.019
5
7mer
5249-5273
0.008
5
7mer
852-878
0.007
3
7mer
1769-1794
0.004
1
6mer
3537-3556
0.003
3
6mer
4070-4091
0.002
4
6mer
6186-6195
0.002
1
6mer
1422-1426
0.002
0
XLOC_012784
hsa-miR-200c-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026436
Biotype: transcript isomorph
Gene id: XLOC_012784
Gene Name: XLOC_012784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1251-1268
0.020
0
6mer
1974-1998
0.015
0
6mer
215-236
0.012
0
RP11-702F3.1
hsa-miR-200c-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528480
Biotype: lincRNA
Gene id: ENSG00000254653
Gene Name: RP11-702F3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-86
0.023
1
7mer
449-472
0.011
1
6mer
414-441
0.008
5
6mer
284-307
0.004
1
XLOC_006507
hsa-miR-200c-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013201
Biotype: transcript isomorph
Gene id: XLOC_006507
Gene Name: XLOC_006507
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8036-8057
0.030
0
7mer
7950-7971
0.008
1
6mer
8384-8410
0.004
1
6mer
2654-2673
0.002
1
6mer
1641-1657
0.002
1
RP3-323A16.1
hsa-miR-200c-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26197-26219
0.008
1
7mer
43777-43803
0.005
0
7mer
24983-25005
0.004
1
7mer
42265-42290
0.004
Not Conserved
7mer
19377-19399
0.004
0
7mer
1893-1911
0.003
1
6mer
19991-20008
0.002
2
6mer
28191-28205
0.002
1
6mer
19096-19114
0.002
1
6mer
15402-15420
0.002
0
6mer
27442-27467
0.002
1
6mer
52231-52250
0.002
1
6mer
23316-23326
0.001
Not Conserved
6mer
47875-47894
0.001
0
6mer
15095-15122
0.001
0
6mer
38311-38336
0.001
Not Conserved
XLOC_011949
hsa-miR-200c-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024661
Biotype: transcript isomorph
Gene id: XLOC_011949
Gene Name: XLOC_011949
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
461-485
0.017
6
7mer
1526-1553
0.011
4
7mer
197-213
0.010
1
6mer
487-509
0.008
9
RP11-674P19.2
hsa-miR-200c-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579651
Biotype: lincRNA
Gene id: ENSG00000264705
Gene Name: RP11-674P19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1413-1425
0.031
1
7mer
130-152
0.012
0
6mer
970-990
0.003
1
AC093627.10
hsa-miR-200c-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000484550
Biotype: lincRNA
Gene id: ENSG00000240859
Gene Name: AC093627.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4560-4584
0.029
1
7mer
4806-4828
0.015
0
6mer
1410-1437
0.002
0
XLOC_003250
hsa-miR-200c-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006657
Biotype: transcript isomorph
Gene id: XLOC_003250
Gene Name: XLOC_003250
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
924-949
0.045
0
LINC00944
hsa-miR-200c-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544499
Biotype: lincRNA
Gene id: ENSG00000256128
Gene Name: LINC00944
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-318
0.045
1
XLOC_009783
hsa-miR-200c-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020451
Biotype: transcript isomorph
Gene id: XLOC_009783
Gene Name: XLOC_009783
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
452-474
0.045
0
RP11-876F14.1
hsa-miR-200c-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526154
Biotype: lincRNA
Gene id: ENSG00000254511
Gene Name: RP11-876F14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-63
0.045
1
CTD-2574D22.4
hsa-miR-200c-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567795
Biotype: sense_intronic
Gene id: ENSG00000260114
Gene Name: CTD-2574D22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-238
0.044
1
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