LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
RP11-831F12.2
hsa-miR-200c-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557160
Biotype: antisense
Gene id: ENSG00000258400
Gene Name: RP11-831F12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
538-560
0.014
1
7mer
427-447
0.011
1
RP11-363G2.4
hsa-miR-200c-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000445646
Biotype: lincRNA
Gene id: ENSG00000229556
Gene Name: RP11-363G2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1332-1349
0.013
0
6mer
1640-1654
0.011
0
RP11-25K19.1
hsa-miR-200c-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517898
Biotype: antisense
Gene id: ENSG00000167912
Gene Name: RP11-25K19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
593-609
0.025
0
XLOC_003209
hsa-miR-200c-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006601
Biotype: transcript isomorph
Gene id: XLOC_003209
Gene Name: XLOC_003209
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4416-4433
0.023
0
6mer
2613-2635
0.002
4
CTA-228A9.4
hsa-miR-200c-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
10517-10538
0.012
1
6mer
216-241
0.003
0
6mer
16416-16441
0.002
1
6mer
8440-8462
0.002
0
6mer
3707-3726
0.002
1
6mer
5743-5767
0.002
0
6mer
8740-8764
0.001
0
6mer
2236-2260
0.001
0
RP11-792A8.4
hsa-miR-200c-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000607978
Biotype: antisense
Gene id: ENSG00000272831
Gene Name: RP11-792A8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-120
0.025
2
HPVC1
hsa-miR-200c-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_004422.2
Biotype: lincRNA
Gene id: NR_004422.2 (gene)
Gene Name: HPVC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-152
0.020
1
6mer
889-908
0.005
0
XLOC_008559
hsa-miR-200c-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018783
Biotype: transcript isomorph
Gene id: XLOC_008559
Gene Name: XLOC_008559
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
348-363
0.014
1
6mer
250-266
0.005
1
6mer
746-761
0.003
2
6mer
2381-2402
0.003
2
XLOC_013531
hsa-miR-200c-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028172
Biotype: transcript isomorph
Gene id: XLOC_013531
Gene Name: XLOC_013531
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5059-5085
0.017
1
7mer
3555-3568
0.004
1
7mer
1455-1481
0.003
Not Conserved
RP11-305E6.4
hsa-miR-200c-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000561542
Biotype: sense_overlapping
Gene id: ENSG00000259994
Gene Name: RP11-305E6.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-121
0.009
1
6mer
227-245
0.008
4
7mer
582-604
0.008
1
RP11-154D6.1
hsa-miR-200c-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000590780
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-121
0.025
4
XLOC_014386
hsa-miR-200c-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029913
Biotype: transcript isomorph
Gene id: XLOC_014386
Gene Name: XLOC_014386
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
177-201
0.018
1
6mer
69-90
0.006
0
RP11-154D6.1
hsa-miR-200c-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434683
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-121
0.025
4
RP11-152L7.2
hsa-miR-200c-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456026
Biotype: lincRNA
Gene id: ENSG00000232100
Gene Name: RP11-152L7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1392-1407
0.013
3
6mer
1637-1660
0.007
2
6mer
1685-1698
0.005
0
LINC01099
hsa-miR-200c-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507011
Biotype: lincRNA
Gene id: ENSG00000251504
Gene Name: LINC01099
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-89
0.025
1
RP11-321C24.1
hsa-miR-200c-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000437748
Biotype: lincRNA
Gene id: ENSG00000223732
Gene Name: RP11-321C24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
133-156
0.025
0
CTD-2636A23.2
hsa-miR-200c-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000569313
Biotype: antisense
Gene id: ENSG00000261604
Gene Name: CTD-2636A23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
178-197
0.019
6
7mer
58-82
0.006
2
RP11-278I4.2
hsa-miR-200c-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518362
Biotype: antisense
Gene id: ENSG00000254278
Gene Name: RP11-278I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
432-453
0.019
1
6mer
134-154
0.005
3
RP11-383H13.1
hsa-miR-200c-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519068
Biotype: antisense
Gene id: ENSG00000235531
Gene Name: RP11-383H13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-63
0.025
1
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