LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-200c-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
AP000431.1
hsa-miR-200c-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000450653
Biotype: lincRNA
Gene id: ENSG00000235965
Gene Name: AP000431.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
649-670
0.015
0
6mer
246-272
0.010
6
AL157359.4
hsa-miR-200c-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000440372
Biotype: lincRNA
Gene id: ENSG00000232193
Gene Name: AL157359.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
201-214
0.025
1
XLOC_002440
hsa-miR-200c-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004538
Biotype: transcript isomorph
Gene id: XLOC_002440
Gene Name: XLOC_002440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3506-3529
0.016
Not Conserved
7mer
2029-2055
0.006
0
6mer
1855-1871
0.003
1
6mer
1533-1557
0.002
2
RP5-1139I1.1
hsa-miR-200c-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000428222
Biotype: lincRNA
Gene id: ENSG00000230392
Gene Name: RP5-1139I1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2624-2647
0.025
0
BAALC-AS1
hsa-miR-200c-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520025
Biotype: antisense
Gene id: ENSG00000247081
Gene Name: BAALC-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
89-109
0.025
1
XLOC_010853
hsa-miR-200c-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022327
Biotype: transcript isomorph
Gene id: XLOC_010853
Gene Name: XLOC_010853
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
353-375
0.025
5
CMP21-97G8.2
hsa-miR-200c-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000608289
Biotype: lincRNA
Gene id: ENSG00000272958
Gene Name: CMP21-97G8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
149-170
0.018
1
6mer
456-477
0.007
1
CTD-2521M24.9
hsa-miR-200c-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594426
Biotype: lincRNA
Gene id: ENSG00000269640
Gene Name: CTD-2521M24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
797-824
0.025
1
LINC01102
hsa-miR-200c-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000429464
Biotype: lincRNA
Gene id: ENSG00000235597
Gene Name: LINC01102
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2004-2027
0.013
0
6mer
1447-1471
0.004
0
6mer
1123-1141
0.003
2
6mer
461-488
0.003
0
6mer
1177-1186
0.002
2
LINC00643
hsa-miR-200c-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000623985
Biotype: lincRNA
Gene id: ENSG00000186369
Gene Name: LINC00643
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
353-375
0.025
5
LINC00892
hsa-miR-200c-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000427517
Biotype: retained_intron
Gene id: ENSG00000233093
Gene Name: LINC00892
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1496-1516
0.025
2
INTS6-AS1
hsa-miR-200c-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000601034
Biotype: antisense
Gene id: ENSG00000236778
Gene Name: INTS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1833-1853
0.005
0
7mer
1718-1738
0.004
0
6mer
2670-2679
0.004
1
7mer
1833-1859
0.003
0
7mer
1861-1878
0.003
0
7mer
1850-1869
0.003
Not Conserved
7mer
1778-1798
0.002
0
6mer
1752-1778
0.001
2
LINC00564
hsa-miR-200c-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000567258
Biotype: lincRNA
Gene id: ENSG00000260094
Gene Name: LINC00564
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
295-311
0.010
0
6mer
505-532
0.006
2
6mer
264-281
0.005
0
6mer
666-687
0.004
0
RP11-278C7.3
hsa-miR-200c-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000620472
Biotype: sense_intronic
Gene id: ENSG00000274105
Gene Name: RP11-278C7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-253
0.017
1
6mer
279-298
0.008
2
CTD-2235C13.3
hsa-miR-200c-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607296
Biotype: lincRNA
Gene id: ENSG00000271815
Gene Name: CTD-2235C13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
477-482
0.025
2
XLOC_010670
hsa-miR-200c-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022065
Biotype: transcript isomorph
Gene id: XLOC_010670
Gene Name: XLOC_010670
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
307-325
0.016
6
6mer
343-361
0.009
6
CTC-484P3.3
hsa-miR-200c-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513849
Biotype: antisense
Gene id: ENSG00000249175
Gene Name: CTC-484P3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
589-609
0.025
4
C5orf64
hsa-miR-200c-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502395
Biotype: retained_intron
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
184-208
0.025
5
RP11-214L13.1
hsa-miR-200c-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000563553
Biotype: lincRNA
Gene id: ENSG00000260930
Gene Name: RP11-214L13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
944-963
0.025
1
RP3-468B3.2
hsa-miR-200c-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000451317
Biotype: lincRNA
Gene id: ENSG00000233183
Gene Name: RP3-468B3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3507-3527
0.014
1
7mer
3006-3011
0.011
4
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept