LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
AP001042.1
hsa-miR-200c-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000416842
Biotype: lincRNA
Gene id: ENSG00000229986
Gene Name: AP001042.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-59
0.026
1
XLOC_013486
hsa-miR-200c-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028127
Biotype: transcript isomorph
Gene id: XLOC_013486
Gene Name: XLOC_013486
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-157
0.026
Not Conserved
XLOC_005715
hsa-miR-200c-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012166
Biotype: transcript isomorph
Gene id: XLOC_005715
Gene Name: XLOC_005715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1162-1168
0.017
1
6mer
217-234
0.006
0
6mer
549-565
0.003
1
RP11-260M2.1
hsa-miR-200c-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608095
Biotype: antisense
Gene id: ENSG00000272807
Gene Name: RP11-260M2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
538-552
0.017
3
6mer
420-442
0.009
8
LINC00649
hsa-miR-200c-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000427447
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8838-8855
0.016
3
8mer
147-166
0.005
0
6mer
2540-2566
0.002
0
6mer
1877-1899
0.002
1
DDR1-AS1
hsa-miR-200c-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458361
Biotype: antisense
Gene id: ENSG00000237775
Gene Name: DDR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1270-1296
0.017
0
7mer
2016-2037
0.005
1
7mer
1930-1943
0.004
1
XLOC_003087
hsa-miR-200c-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006482
Biotype: transcript isomorph
Gene id: XLOC_003087
Gene Name: XLOC_003087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
83-100
0.026
2
XLOC_000980
hsa-miR-200c-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000616
Biotype: transcript isomorph
Gene id: XLOC_000980
Gene Name: XLOC_000980
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
848-868
0.011
1
7mer
206-224
0.009
2
6mer
503-528
0.005
3
WDR86-AS1
hsa-miR-200c-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000480632
Biotype: antisense
Gene id: ENSG00000243836
Gene Name: WDR86-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
639-664
0.026
1
RP11-531A24.3
hsa-miR-200c-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000564832
Biotype: lincRNA
Gene id: ENSG00000260838
Gene Name: RP11-531A24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2725-2735
0.009
4
6mer
3080-3107
0.005
2
6mer
1159-1179
0.004
7
6mer
2593-2612
0.004
3
6mer
1481-1501
0.002
1
6mer
1201-1222
0.001
1
XLOC_002872
hsa-miR-200c-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006268
Biotype: transcript isomorph
Gene id: XLOC_002872
Gene Name: XLOC_002872
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2822-2845
0.010
0
6mer
3044-3057
0.008
4
6mer
2686-2710
0.004
0
6mer
875-894
0.003
0
6mer
1559-1577
0.001
1
MCM3AP-AS1
hsa-miR-200c-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000414659
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2107-2133
0.017
0
8mer
2265-2287
0.009
1
LINC00924
hsa-miR-200c-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556053
Biotype: lincRNA
Gene id: ENSG00000259134
Gene Name: LINC00924
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-131
0.017
3
6mer
2583-2610
0.006
1
6mer
817-839
0.003
1
RP11-588K22.2
hsa-miR-200c-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000569449
Biotype: sense_overlapping
Gene id: ENSG00000260244
Gene Name: RP11-588K22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
607-631
0.012
1
7mer
1333-1353
0.007
1
6mer
1798-1807
0.003
1
6mer
1531-1554
0.002
0
6mer
1549-1559
0.002
3
XLOC_002498
hsa-miR-200c-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004594
Biotype: transcript isomorph
Gene id: XLOC_002498
Gene Name: XLOC_002498
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3400-3419
0.017
2
6mer
1917-1938
0.002
2
6mer
5053-5075
0.002
1
6mer
2286-2309
0.002
1
6mer
3098-3124
0.001
1
6mer
2508-2533
0.001
1
MACC1-AS1
hsa-miR-200c-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439285
Biotype: antisense
Gene id: ENSG00000228598
Gene Name: MACC1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
121-147
0.018
4
7mer
287-300
0.007
0
XLOC_005690
hsa-miR-200c-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012702
Biotype: transcript isomorph
Gene id: XLOC_005690
Gene Name: XLOC_005690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-104
0.020
7
6mer
1255-1272
0.005
2
LINC00632
hsa-miR-200c-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000607004
Biotype: lincRNA
Gene id: ENSG00000203930
Gene Name: LINC00632
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
617-636
0.025
1
RP13-735L24.1
hsa-miR-200c-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000567749
Biotype: lincRNA
Gene id: ENSG00000260423
Gene Name: RP13-735L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1399-1424
0.019
1
7mer
1112-1132
0.005
1
6mer
1176-1196
0.001
Not Conserved
LINC01006
hsa-miR-200c-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440711
Biotype: lincRNA
Gene id: ENSG00000182648
Gene Name: LINC01006
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-34
0.025
1
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