LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
CTB-171A8.1
hsa-miR-200c-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586169
Biotype: antisense
Gene id: ENSG00000266903
Gene Name: CTB-171A8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
57-70
0.027
1
XLOC_008666
hsa-miR-200c-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017891
Biotype: transcript isomorph
Gene id: XLOC_008666
Gene Name: XLOC_008666
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
335-346
0.016
0
7mer
2282-2298
0.011
1
RP11-573G6.6
hsa-miR-200c-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000566763
Biotype: lincRNA
Gene id: ENSG00000261671
Gene Name: RP11-573G6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-106
0.027
4
RP11-693L9.2
hsa-miR-200c-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588449
Biotype: lincRNA
Gene id: ENSG00000267209
Gene Name: RP11-693L9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-49
0.027
1
XLOC_007141
hsa-miR-200c-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015064
Biotype: transcript isomorph
Gene id: XLOC_007141
Gene Name: XLOC_007141
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
798-823
0.027
0
XLOC_009913
hsa-miR-200c-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020238
Biotype: transcript isomorph
Gene id: XLOC_009913
Gene Name: XLOC_009913
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
287-305
0.016
4
7mer
800-817
0.006
0
6mer
176-190
0.005
1
RP11-82L18.2
hsa-miR-200c-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000456944
Biotype: sense_intronic
Gene id: ENSG00000224945
Gene Name: RP11-82L18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
458-478
0.027
0
DKFZp566F0947
hsa-miR-200c-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_026894.1
Biotype: lincRNA
Gene id: NR_026894.1 (gene)
Gene Name: DKFZp566F0947
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-61
0.027
1
LOC102659288
hsa-miR-200c-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110015.1
Biotype: lincRNA
Gene id: NR_110015.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
877-897
0.027
Not Conserved
RP11-1072C15.4
hsa-miR-200c-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591628
Biotype: antisense
Gene id: ENSG00000267160
Gene Name: RP11-1072C15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2061-2086
0.009
1
6mer
113-139
0.007
0
6mer
1336-1363
0.005
9
6mer
621-641
0.003
1
6mer
1047-1070
0.002
Not Conserved
RP11-693L9.2
hsa-miR-200c-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585702
Biotype: lincRNA
Gene id: ENSG00000267209
Gene Name: RP11-693L9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-49
0.027
1
MALAT1
hsa-miR-200c-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5436-5457
0.008
5
7mer
3445-3464
0.003
0
6mer
7962-7988
0.003
Not Conserved
6mer
1072-1095
0.002
0
6mer
7292-7318
0.002
1
6mer
3919-3937
0.002
4
6mer
4392-4419
0.002
1
6mer
4603-4627
0.002
2
6mer
3334-3359
0.001
1
8mer+mismatch
4902-4921
0.001
2
XLOC_004363
hsa-miR-200c-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009935
Biotype: transcript isomorph
Gene id: XLOC_004363
Gene Name: XLOC_004363
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
936-948
0.008
0
6mer
1857-1873
0.007
0
6mer
1652-1672
0.006
0
6mer
1347-1364
0.005
0
RP11-438D14.3
hsa-miR-200c-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614876
Biotype: sense_intronic
Gene id: ENSG00000273853
Gene Name: RP11-438D14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
359-379
0.027
1
LINC00643
hsa-miR-200c-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000623219
Biotype: lincRNA
Gene id: ENSG00000186369
Gene Name: LINC00643
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
331-353
0.027
5
XLOC_001780
hsa-miR-200c-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003963
Biotype: transcript isomorph
Gene id: XLOC_001780
Gene Name: XLOC_001780
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
417-437
0.027
1
XLOC_009818
hsa-miR-200c-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020191
Biotype: transcript isomorph
Gene id: XLOC_009818
Gene Name: XLOC_009818
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
413-438
0.010
1
8mer+wobble
1229-1247
0.010
1
6mer
775-799
0.007
5
PART1
hsa-miR-200c-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515734
Biotype: lincRNA
Gene id: ENSG00000152931
Gene Name: PART1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-151
0.020
4
6mer
2036-2058
0.004
3
6mer
1605-1622
0.002
2
AC003984.1
hsa-miR-200c-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450977
Biotype: lincRNA
Gene id: ENSG00000235139
Gene Name: AC003984.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
497-521
0.012
1
7mer
246-262
0.007
1
7mer
2648-2669
0.006
1
6mer
2889-2901
0.002
0
KRT73-AS1
hsa-miR-200c-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552364
Biotype: antisense
Gene id: ENSG00000257495
Gene Name: KRT73-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-30
0.027
0
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