LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
AC087430.1
hsa-miR-200c-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451707
Biotype: lincRNA
Gene id: ENSG00000235158
Gene Name: AC087430.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2464-2479
0.021
1
6mer
479-504
0.004
0
7mer
2464-2489
0.002
1
RP11-714M23.2
hsa-miR-200c-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000620778
Biotype: lincRNA
Gene id: ENSG00000277837
Gene Name: RP11-714M23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-85
0.025
1
6mer
2412-2429
0.002
0
RP11-99C10.1
hsa-miR-200c-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527345
Biotype: lincRNA
Gene id: ENSG00000254830
Gene Name: RP11-99C10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
227-253
0.027
0
RP5-951N9.2
hsa-miR-200c-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537181
Biotype: sense_intronic
Gene id: ENSG00000267285
Gene Name: RP5-951N9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
418-439
0.027
2
RP11-977G19.11
hsa-miR-200c-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549860
Biotype: antisense
Gene id: ENSG00000257303
Gene Name: RP11-977G19.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
272-293
0.027
6
XLOC_007942
hsa-miR-200c-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016971
Biotype: transcript isomorph
Gene id: XLOC_007942
Gene Name: XLOC_007942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5696-5720
0.012
1
8mer
3274-3299
0.007
1
7mer
2798-2809
0.005
1
7mer
5336-5360
0.002
1
6mer
5270-5286
0.001
1
RP11-410E4.1
hsa-miR-200c-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000564407
Biotype: lincRNA
Gene id: ENSG00000259915
Gene Name: RP11-410E4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
506-512
0.020
1
8mer
1204-1225
0.007
1
RP11-482H16.1
hsa-miR-200c-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607540
Biotype: processed_transcript
Gene id: ENSG00000271894
Gene Name: RP11-482H16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2228-2243
0.018
3
6mer
2179-2204
0.009
7
LINC01410
hsa-miR-200c-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000424345
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
629-650
0.027
0
AP000235.2
hsa-miR-200c-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441009
Biotype: lincRNA
Gene id: ENSG00000226983
Gene Name: AP000235.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1014-1037
0.014
1
8mer
1000-1013
0.007
1
6mer
2521-2544
0.006
1
RP1-79C4.1
hsa-miR-200c-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413005
Biotype: lincRNA
Gene id: ENSG00000235303
Gene Name: RP1-79C4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1854-1876
0.019
1
6mer
88-112
0.008
1
XLOC_011368
hsa-miR-200c-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023532
Biotype: transcript isomorph
Gene id: XLOC_011368
Gene Name: XLOC_011368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
828-846
0.010
3
6mer
3696-3723
0.006
1
7mer
279-299
0.006
0
6mer
271-289
0.004
Not Conserved
6mer
1930-1952
0.002
1
RP11-876N24.2
hsa-miR-200c-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000572017
Biotype: antisense
Gene id: ENSG00000262151
Gene Name: RP11-876N24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
540-563
0.027
3
RP11-86H7.6
hsa-miR-200c-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413541
Biotype: lincRNA
Gene id: ENSG00000223675
Gene Name: RP11-86H7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
359-379
0.014
1
7mer
435-450
0.013
4
RP11-693L9.2
hsa-miR-200c-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591503
Biotype: lincRNA
Gene id: ENSG00000267209
Gene Name: RP11-693L9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-49
0.027
1
XLOC_004725
hsa-miR-200c-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009596
Biotype: transcript isomorph
Gene id: XLOC_004725
Gene Name: XLOC_004725
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3119-3139
0.015
0
7mer
3467-3487
0.011
1
6mer
2419-2435
0.001
Not Conserved
SNHG14
hsa-miR-200c-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000551631
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1679-1686
0.022
1
6mer
945-970
0.005
2
LINC00535
hsa-miR-200c-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000501400
Biotype: antisense
Gene id: ENSG00000246662
Gene Name: LINC00535
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
464-484
0.027
1
CTD-2161F6.3
hsa-miR-200c-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503757
Biotype: lincRNA
Gene id: ENSG00000249521
Gene Name: CTD-2161F6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
129-148
0.027
0
RP11-384P7.7
hsa-miR-200c-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566968
Biotype: lincRNA
Gene id: ENSG00000260947
Gene Name: RP11-384P7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2401-2425
0.009
1
6mer
3106-3128
0.007
1
6mer
903-918
0.004
1
6mer
2590-2617
0.004
1
7mer
2408-2431
0.004
0
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