LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
LOC102659288
hsa-miR-200c-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110014.1
Biotype: lincRNA
Gene id: NR_110014.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
945-965
0.028
Not Conserved
CTD-2036A18.2
hsa-miR-200c-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504046
Biotype: lincRNA
Gene id: ENSG00000249153
Gene Name: CTD-2036A18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
155-178
0.024
1
6mer
101-124
0.004
0
RP11-506K6.4
hsa-miR-200c-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607565
Biotype: antisense
Gene id: ENSG00000272320
Gene Name: RP11-506K6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1617-1641
0.028
1
LINC00865
hsa-miR-200c-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000448963
Biotype: lincRNA
Gene id: ENSG00000232229
Gene Name: LINC00865
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3831-3857
0.012
1
7mer
3117-3141
0.010
1
6mer
124-145
0.006
1
XLOC_007688
hsa-miR-200c-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015809
Biotype: transcript isomorph
Gene id: XLOC_007688
Gene Name: XLOC_007688
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
394-413
0.014
0
6mer
140-157
0.013
1
TRHDE-AS1
hsa-miR-200c-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549957
Biotype: retained_intron
Gene id: ENSG00000236333
Gene Name: TRHDE-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
661-683
0.010
1
7mer
1613-1634
0.005
1
6mer
4374-4391
0.004
0
7mer
3195-3216
0.004
1
6mer
438-455
0.004
1
6mer
3653-3667
0.002
0
RP5-905H7.11
hsa-miR-200c-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000456890
Biotype: retained_intron
Gene id: ENSG00000230000
Gene Name: RP5-905H7.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2612-2635
0.024
0
6mer
2729-2752
0.003
Not Conserved
RP11-154D6.1
hsa-miR-200c-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000585945
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-117
0.028
4
RP11-1060J15.4
hsa-miR-200c-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536317
Biotype: antisense
Gene id: ENSG00000256377
Gene Name: RP11-1060J15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
806-825
0.023
1
6mer
333-347
0.004
2
NEAT1
hsa-miR-200c-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11768-11788
0.007
1
7mer
15828-15852
0.004
Not Conserved
7mer
10141-10146
0.003
0
7mer
5481-5499
0.003
1
6mer
14208-14233
0.003
2
6mer
18754-18779
0.002
2
6mer
17418-17438
0.002
0
6mer
8622-8640
0.001
0
6mer
8320-8341
0.001
1
6mer
3518-3542
0.001
1
6mer
3874-3893
0.001
0
XLOC_003111
hsa-miR-200c-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006505
Biotype: transcript isomorph
Gene id: XLOC_003111
Gene Name: XLOC_003111
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
181-199
0.013
1
7mer
671-689
0.009
1
6mer
1022-1034
0.005
1
HOXB-AS2
hsa-miR-200c-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000464382
Biotype: antisense
Gene id: ENSG00000239552
Gene Name: HOXB-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-101
0.027
6
RP11-479O17.10
hsa-miR-200c-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608229
Biotype: lincRNA
Gene id: ENSG00000273372
Gene Name: RP11-479O17.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4930-4945
0.013
Not Conserved
8mer
185-204
0.008
Not Conserved
6mer
3028-3053
0.003
0
6mer
3218-3223
0.002
0
6mer
1531-1555
0.001
Not Conserved
LINC01194
hsa-miR-200c-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505877
Biotype: lincRNA
Gene id: ENSG00000248131
Gene Name: LINC01194
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1012-1028
0.011
2
6mer
1192-1213
0.008
1
6mer
620-647
0.004
1
6mer
576-598
0.004
1
RP11-464D20.6
hsa-miR-200c-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583426
Biotype: sense_intronic
Gene id: ENSG00000264546
Gene Name: RP11-464D20.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1399-1420
0.017
0
7mer
1309-1314
0.011
0
XLOC_007358
hsa-miR-200c-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015672
Biotype: transcript isomorph
Gene id: XLOC_007358
Gene Name: XLOC_007358
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
970-987
0.013
1
XLOC_009807
hsa-miR-200c-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020190
Biotype: transcript isomorph
Gene id: XLOC_009807
Gene Name: XLOC_009807
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1069-1082
0.019
1
6mer
1313-1339
0.005
1
6mer
871-876
0.003
1
RP11-806L2.2
hsa-miR-200c-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585150
Biotype: antisense
Gene id: ENSG00000266456
Gene Name: RP11-806L2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
862-878
0.015
Not Conserved
7mer
369-392
0.013
2
RP11-764K9.1
hsa-miR-200c-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417843
Biotype: lincRNA
Gene id: ENSG00000225411
Gene Name: RP11-764K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2230-2250
0.027
0
CXorf24
hsa-miR-200c-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000624822
Biotype: lincRNA
Gene id: ENSG00000196741
Gene Name: CXorf24
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1068-1092
0.027
1
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