LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
PSMD5-AS1
hsa-miR-200c-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000611982
Biotype: antisense
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
418-437
0.020
1
7mer
32-55
0.008
0
CTD-2521M24.9
hsa-miR-200c-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000500836
Biotype: lincRNA
Gene id: ENSG00000269640
Gene Name: CTD-2521M24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
616-643
0.017
1
7mer
948-961
0.012
1
XLOC_001532
hsa-miR-200c-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003733
Biotype: transcript isomorph
Gene id: XLOC_001532
Gene Name: XLOC_001532
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
777-799
0.028
1
RP11-545I5.3
hsa-miR-200c-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606388
Biotype: antisense
Gene id: ENSG00000235652
Gene Name: RP11-545I5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
624-650
0.011
1
7mer
1521-1543
0.006
1
7mer
2082-2100
0.005
2
6mer
3508-3534
0.003
2
6mer
2922-2942
0.003
1
AC063980.3
hsa-miR-200c-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514282
Biotype: lincRNA
Gene id: ENSG00000279240
Gene Name: AC063980.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-389
0.028
2
XLOC_010592
hsa-miR-200c-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021992
Biotype: transcript isomorph
Gene id: XLOC_010592
Gene Name: XLOC_010592
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4059-4077
0.008
0
9mer
2739-2761
0.007
0
9mer
3274-3296
0.006
0
6mer
5303-5323
0.005
0
6mer
4262-4285
0.001
0
6mer
2954-2975
0.001
0
6mer
3596-3616
0.001
0
CTD-2001C12.1
hsa-miR-200c-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499025
Biotype: lincRNA
Gene id: ENSG00000247877
Gene Name: CTD-2001C12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
280-298
0.028
3
PSMD5-AS1
hsa-miR-200c-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000612398
Biotype: antisense
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-398
0.021
1
7mer
140-163
0.007
0
CTD-2135J3.3
hsa-miR-200c-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000506149
Biotype: antisense
Gene id: ENSG00000248896
Gene Name: CTD-2135J3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
712-735
0.028
0
RP11-154D6.1
hsa-miR-200c-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000589255
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-60
0.028
4
RP11-480I12.10
hsa-miR-200c-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564127
Biotype: antisense
Gene id: ENSG00000260021
Gene Name: RP11-480I12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-52
0.028
1
SOX2-OT
hsa-miR-200c-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492337
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1798-1822
0.013
4
7mer
361-376
0.008
2
6mer
2132-2153
0.005
3
6mer
1403-1424
0.003
1
CTD-2626G11.2
hsa-miR-200c-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593903
Biotype: lincRNA
Gene id: ENSG00000268416
Gene Name: CTD-2626G11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1020-1041
0.011
Not Conserved
9mer
4739-4757
0.005
Not Conserved
8mer
4232-4253
0.003
Not Conserved
6mer
495-522
0.003
Not Conserved
6mer
569-579
0.002
Not Conserved
7mer
1707-1733
0.002
Not Conserved
6mer
2973-2999
0.001
Not Conserved
DNAJC3-AS1
hsa-miR-200c-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000499499
Biotype: lincRNA
Gene id: ENSG00000247400
Gene Name: DNAJC3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2139-2159
0.013
1
7mer
632-654
0.007
1
6mer
278-298
0.005
1
6mer
351-371
0.003
0
LINC01204
hsa-miR-200c-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000435394
Biotype: lincRNA
Gene id: ENSG00000229563
Gene Name: LINC01204
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
548-570
0.019
3
7mer
680-695
0.006
2
6mer
1735-1758
0.004
1
AC005307.3
hsa-miR-200c-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591920
Biotype: lincRNA
Gene id: ENSG00000267243
Gene Name: AC005307.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7-22
0.028
1
LINC01119
hsa-miR-200c-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000468141
Biotype: lincRNA
Gene id: ENSG00000239332
Gene Name: LINC01119
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-322
0.023
1
6mer
261-279
0.005
1
AL132796.1
hsa-miR-200c-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000421617
Biotype: lincRNA
Gene id: ENSG00000237342
Gene Name: AL132796.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-126
0.028
2
XLOC_001546
hsa-miR-200c-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003749
Biotype: transcript isomorph
Gene id: XLOC_001546
Gene Name: XLOC_001546
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
268-292
0.028
1
RP11-389C8.2
hsa-miR-200c-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000564956
Biotype: sense_overlapping
Gene id: ENSG00000261269
Gene Name: RP11-389C8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1520-1537
0.021
0
6mer
2341-2359
0.004
1
6mer
789-807
0.003
1
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