LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-200c-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-120K9.2
hsa-miR-200c-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558237
Biotype: antisense
Gene id: ENSG00000259684
Gene Name: RP11-120K9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-267
0.030
0
AP001171.1
hsa-miR-200c-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000436373
Biotype: lincRNA
Gene id: ENSG00000233236
Gene Name: AP001171.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
522-545
0.030
0
RP11-71H17.7
hsa-miR-200c-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000568966
Biotype: sense_overlapping
Gene id: ENSG00000260391
Gene Name: RP11-71H17.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2182-2197
0.025
9
7mer
1367-1384
0.005
3
HTR5AOS
hsa-miR-200c-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000395731
Biotype: antisense
Gene id: ENSG00000220575
Gene Name: HTR5AOS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
259-283
0.023
0
7mer
1082-1101
0.004
0
8mer
1426-1444
0.003
Not Conserved
RP11-1024P17.1
hsa-miR-200c-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000561507
Biotype: sense_overlapping
Gene id: ENSG00000261468
Gene Name: RP11-1024P17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
108-119
0.019
1
6mer
40-62
0.008
2
6mer
1120-1142
0.003
1
CXorf24
hsa-miR-200c-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000357412
Biotype: lincRNA
Gene id: ENSG00000196741
Gene Name: CXorf24
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1068-1092
0.030
1
CMB9-55A18.1
hsa-miR-200c-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000601906
Biotype: antisense
Gene id: ENSG00000269570
Gene Name: CMB9-55A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1405-1431
0.015
3
6mer
203-213
0.007
4
6mer
1488-1514
0.005
1
6mer
888-900
0.004
1
NIFK-AS1
hsa-miR-200c-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439321
Biotype: antisense
Gene id: ENSG00000236859
Gene Name: NIFK-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
964-976
0.017
1
7mer
1129-1153
0.013
1
RP11-613D13.5
hsa-miR-200c-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499066
Biotype: antisense
Gene id: ENSG00000246250
Gene Name: RP11-613D13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-139
0.014
0
7mer
182-203
0.012
1
6mer
281-299
0.004
1
LINC00347
hsa-miR-200c-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000600832
Biotype: lincRNA
Gene id: ENSG00000236678
Gene Name: LINC00347
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
618-645
0.024
8
6mer
441-464
0.006
6
LINC01347
hsa-miR-200c-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411733
Biotype: retained_intron
Gene id: ENSG00000214837
Gene Name: LINC01347
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
438-444
0.030
0
MYLK-AS2
hsa-miR-200c-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000515464
Biotype: antisense
Gene id: ENSG00000250174
Gene Name: MYLK-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195-217
0.030
2
SNHG14
hsa-miR-200c-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000546682
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3592-3608
0.006
1
7mer
1677-1697
0.005
1
7mer
5084-5108
0.004
1
6mer
7987-8004
0.004
1
6mer
4091-4106
0.003
1
6mer
8002-8028
0.003
1
6mer
1399-1423
0.002
2
6mer
2700-2727
0.002
1
6mer
6533-6558
0.001
0
RP11-1070N10.4
hsa-miR-200c-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553785
Biotype: lincRNA
Gene id: ENSG00000258390
Gene Name: RP11-1070N10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1255-1276
0.015
0
6mer
377-400
0.007
1
6mer
550-566
0.005
1
6mer
842-855
0.003
Not Conserved
RP11-469N6.2
hsa-miR-200c-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529922
Biotype: lincRNA
Gene id: ENSG00000255344
Gene Name: RP11-469N6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-92
0.029
0
RP11-510D19.1
hsa-miR-200c-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_038325.1
Biotype: lincRNA
Gene id: NR_038325.1 (gene)
Gene Name: RP11-510D19.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1807-1831
0.013
1
6mer
17-43
0.007
1
7mer
2171-2185
0.006
1
6mer
2281-2302
0.003
0
6mer
1449-1475
0.002
2
RP11-264E20.2
hsa-miR-200c-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000602773
Biotype: lincRNA
Gene id: ENSG00000270160
Gene Name: RP11-264E20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12-32
0.029
1
FAM138B
hsa-miR-200c-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432583
Biotype: lincRNA
Gene id: ENSG00000226516
Gene Name: FAM138B
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
556-575
0.023
2
7mer
763-782
0.006
1
AC007246.3
hsa-miR-200c-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449569
Biotype: antisense
Gene id: ENSG00000231312
Gene Name: AC007246.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2141-2167
0.025
4
7mer
1922-1936
0.005
0
RP11-9E17.1
hsa-miR-200c-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000620414
Biotype: sense_intronic
Gene id: ENSG00000277534
Gene Name: RP11-9E17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2782-2806
0.023
3
6mer
466-489
0.004
0
6mer
1784-1802
0.002
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept