LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-200c-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-32D16.1
hsa-miR-200c-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519609
Biotype: lincRNA
Gene id: ENSG00000254135
Gene Name: RP11-32D16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
325-348
0.031
8
AC007193.9
hsa-miR-200c-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599645
Biotype: antisense
Gene id: ENSG00000268810
Gene Name: AC007193.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-79
0.031
0
MAGI2-AS3
hsa-miR-200c-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452320
Biotype: retained_intron
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
386-410
0.020
2
7mer
6162-6186
0.004
1
6mer
825-845
0.003
1
6mer
2176-2202
0.003
2
6mer
7050-7069
0.001
0
RP11-321E8.4
hsa-miR-200c-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000442436
Biotype: lincRNA
Gene id: ENSG00000229881
Gene Name: RP11-321E8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
419-444
0.031
1
LINC01446
hsa-miR-200c-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000380970
Biotype: lincRNA
Gene id: ENSG00000205628
Gene Name: LINC01446
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
607-633
0.027
0
6mer
576-596
0.003
1
RP11-553L6.2
hsa-miR-200c-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000493033
Biotype: antisense
Gene id: ENSG00000241490
Gene Name: RP11-553L6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2312-2328
0.025
3
7mer
1721-1739
0.006
2
AC003009.1
hsa-miR-200c-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571611
Biotype: antisense
Gene id: ENSG00000262011
Gene Name: AC003009.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
466-489
0.022
3
6mer
138-151
0.009
6
NIFK-AS1
hsa-miR-200c-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_037856.1
Biotype: lincRNA
Gene id: NR_037856.1 (gene)
Gene Name: NIFK-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
958-970
0.018
1
7mer
1123-1147
0.013
1
XLOC_012296
hsa-miR-200c-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025127
Biotype: transcript isomorph
Gene id: XLOC_012296
Gene Name: XLOC_012296
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
859-879
0.031
1
LINC01028
hsa-miR-200c-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586373
Biotype: lincRNA
Gene id: ENSG00000267603
Gene Name: LINC01028
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
859-879
0.031
1
RP11-154D6.1
hsa-miR-200c-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000586974
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-36
0.031
4
RP11-1094M14.11
hsa-miR-200c-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592381
Biotype: lincRNA
Gene id: ENSG00000267321
Gene Name: RP11-1094M14.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
225-249
0.018
1
6mer
1016-1038
0.007
3
6mer
455-479
0.006
1
LINC01010
hsa-miR-200c-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431422
Biotype: lincRNA
Gene id: ENSG00000236700
Gene Name: LINC01010
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1916-1941
0.022
Not Conserved
8mer
764-776
0.009
Not Conserved
RP11-502M1.2
hsa-miR-200c-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512652
Biotype: lincRNA
Gene id: ENSG00000249425
Gene Name: RP11-502M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
215-234
0.020
1
6mer
1125-1135
0.004
0
6mer
968-993
0.004
0
6mer
802-819
0.002
1
NIFK-AS1
hsa-miR-200c-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447668
Biotype: antisense
Gene id: ENSG00000236859
Gene Name: NIFK-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1062-1074
0.017
1
7mer
1227-1251
0.013
1
NIFK-AS1
hsa-miR-200c-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414554
Biotype: antisense
Gene id: ENSG00000236859
Gene Name: NIFK-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1105-1117
0.018
1
7mer
1270-1294
0.013
1
NIFK-AS1
hsa-miR-200c-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413904
Biotype: antisense
Gene id: ENSG00000236859
Gene Name: NIFK-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
876-888
0.018
1
7mer
1041-1065
0.013
1
LINC01091
hsa-miR-200c-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515769
Biotype: lincRNA
Gene id: ENSG00000249464
Gene Name: LINC01091
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
554-568
0.022
0
6mer
1996-2014
0.006
2
6mer
1379-1404
0.002
1
CTA-941F9.10
hsa-miR-200c-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10322-10347
0.005
2
7mer
11476-11492
0.005
0
6mer
22222-22246
0.003
0
6mer
20108-20126
0.003
3
7mer
18862-18882
0.003
0
6mer
1337-1357
0.002
0
6mer
8786-8805
0.002
1
6mer
20519-20542
0.002
0
6mer
8214-8234
0.002
1
6mer
2556-2576
0.002
0
6mer
18766-18793
0.001
1
RP11-383H13.1
hsa-miR-200c-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521467
Biotype: antisense
Gene id: ENSG00000235531
Gene Name: RP11-383H13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-111
0.030
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept