LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
FAM138F
hsa-miR-200c-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586011
Biotype: lincRNA
Gene id: ENSG00000233630
Gene Name: FAM138F
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
656-674
0.025
1
7mer
449-468
0.006
0
CTA-292E10.9
hsa-miR-200c-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
7318-7337
0.007
1
7mer
3747-3771
0.006
7
8mer
5979-5997
0.005
5
7mer
10782-10805
0.003
0
6mer
10503-10528
0.002
1
6mer
2817-2830
0.002
3
6mer
9179-9203
0.002
2
6mer
4931-4955
0.002
1
6mer
5161-5183
0.002
0
6mer
2523-2545
0.002
2
RP11-181B18.1
hsa-miR-200c-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425754
Biotype: antisense
Gene id: ENSG00000237919
Gene Name: RP11-181B18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
160-183
0.027
8
6mer
125-142
0.005
1
AC096670.3
hsa-miR-200c-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000376593
Biotype: antisense
Gene id: ENSG00000204581
Gene Name: AC096670.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1894-1914
0.018
7
7mer
2121-2138
0.014
2
LINC01355
hsa-miR-200c-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566551
Biotype: lincRNA
Gene id: ENSG00000261326
Gene Name: LINC01355
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3933-3954
0.008
2
7mer
2359-2383
0.007
1
7mer
1448-1474
0.006
2
7mer
4131-4144
0.005
1
6mer
4726-4741
0.004
1
6mer
2143-2166
0.002
1
XLOC_012427
hsa-miR-200c-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025599
Biotype: transcript isomorph
Gene id: XLOC_012427
Gene Name: XLOC_012427
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1054-1078
0.011
Not Conserved
6mer
612-622
0.011
0
6mer
538-555
0.007
0
7mer
1736-1762
0.002
Not Conserved
CTD-2541J13.2
hsa-miR-200c-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583493
Biotype: antisense
Gene id: ENSG00000263424
Gene Name: CTD-2541J13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-336
0.014
6
8mer
1725-1740
0.011
1
7mer
1431-1453
0.007
4
XLOC_013045
hsa-miR-200c-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026786
Biotype: transcript isomorph
Gene id: XLOC_013045
Gene Name: XLOC_013045
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5691-5708
0.015
0
7mer
5602-5627
0.015
0
6mer
3873-3889
0.002
0
BOLA3-AS1
hsa-miR-200c-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000533563
Biotype: antisense
Gene id: ENSG00000225439
Gene Name: BOLA3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
633-655
0.032
1
MME-AS1
hsa-miR-200c-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000484721
Biotype: antisense
Gene id: ENSG00000240666
Gene Name: MME-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-104
0.026
3
6mer
73-90
0.005
0
WT1-AS
hsa-miR-200c-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000395900
Biotype: antisense
Gene id: ENSG00000183242
Gene Name: WT1-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3131-3156
0.027
3
6mer
3058-3073
0.005
8
XLOC_008762
hsa-miR-200c-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017732
Biotype: transcript isomorph
Gene id: XLOC_008762
Gene Name: XLOC_008762
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-76
0.026
5
6mer
452-470
0.005
1
RP11-681H18.2
hsa-miR-200c-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000612252
Biotype: lincRNA
Gene id: ENSG00000277801
Gene Name: RP11-681H18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5-29
0.031
1
XLOC_013574
hsa-miR-200c-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028230
Biotype: transcript isomorph
Gene id: XLOC_013574
Gene Name: XLOC_013574
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-140
0.031
5
RP11-485G7.6
hsa-miR-200c-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000574681
Biotype: antisense
Gene id: ENSG00000262703
Gene Name: RP11-485G7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
387-409
0.031
0
RP11-367B6.2
hsa-miR-200c-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000445111
Biotype: sense_intronic
Gene id: ENSG00000228280
Gene Name: RP11-367B6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-170
0.031
7
RP11-265E18.1
hsa-miR-200c-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608314
Biotype: lincRNA
Gene id: ENSG00000272905
Gene Name: RP11-265E18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-350
0.022
6
6mer
580-596
0.009
3
LINC00837
hsa-miR-200c-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038376.1
Biotype: lincRNA
Gene id: NR_038376.1 (gene)
Gene Name: LINC00837
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-77
0.027
5
6mer
453-471
0.005
1
LINC00837
hsa-miR-200c-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038375.1
Biotype: lincRNA
Gene id: NR_038375.1 (gene)
Gene Name: LINC00837
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-77
0.027
5
6mer
453-471
0.004
1
XLOC_007279
hsa-miR-200c-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015917
Biotype: transcript isomorph
Gene id: XLOC_007279
Gene Name: XLOC_007279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4784-4799
0.014
0
6mer
65-87
0.007
1
6mer
323-345
0.006
4
6mer
3300-3315
0.002
1
6mer
2837-2851
0.002
1
6mer
2241-2265
0.001
0
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