LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-200c-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-542G1.1
hsa-miR-200c-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505930
Biotype: lincRNA
Gene id: ENSG00000251185
Gene Name: RP11-542G1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-88
0.033
3
RP11-216M21.7
hsa-miR-200c-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2620-2642
0.026
0
7mer
2102-2121
0.007
Not Conserved
XLOC_001668
hsa-miR-200c-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2924-2945
0.020
0
6mer
4877-4895
0.009
1
6mer
3990-4007
0.002
0
6mer
1090-1104
0.002
Not Conserved
XLOC_013778
hsa-miR-200c-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028426
Biotype: transcript isomorph
Gene id: XLOC_013778
Gene Name: XLOC_013778
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6480-6494
0.033
1
RP11-332K15.1
hsa-miR-200c-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419832
Biotype: antisense
Gene id: ENSG00000232524
Gene Name: RP11-332K15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-39
0.033
1
XLOC_005582
hsa-miR-200c-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011431
Biotype: transcript isomorph
Gene id: XLOC_005582
Gene Name: XLOC_005582
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-113
0.032
1
RP11-977G19.11
hsa-miR-200c-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549565
Biotype: antisense
Gene id: ENSG00000257303
Gene Name: RP11-977G19.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
254-275
0.032
6
RP11-560G2.1
hsa-miR-200c-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548779
Biotype: antisense
Gene id: ENSG00000254451
Gene Name: RP11-560G2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
819-832
0.023
1
6mer
621-626
0.005
1
6mer
1063-1089
0.005
1
LOC100506639
hsa-miR-200c-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_102752.1
Biotype: sense
Gene id: NR_102752.1 (gene)
Gene Name: LOC100506639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1343-1363
0.032
1
AC159540.1
hsa-miR-200c-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000612970
Biotype: lincRNA
Gene id: ENSG00000230606
Gene Name: AC159540.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
991-1012
0.032
0
RP4-569M23.2
hsa-miR-200c-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000413818
Biotype: antisense
Gene id: ENSG00000231119
Gene Name: RP4-569M23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1480-1502
0.032
1
RP11-383G6.3
hsa-miR-200c-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460977
Biotype: sense_overlapping
Gene id: ENSG00000244327
Gene Name: RP11-383G6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
381-388
0.032
1
MIR133A1HG
hsa-miR-200c-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581072
Biotype: antisense
Gene id: ENSG00000265142
Gene Name: MIR133A1HG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1489-1512
0.007
Not Conserved
7mer
3193-3213
0.007
3
7mer
2435-2455
0.007
2
7mer
1124-1145
0.006
2
6mer
1785-1804
0.003
4
6mer
2748-2764
0.002
2
RP11-362K2.2
hsa-miR-200c-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548969
Biotype: lincRNA
Gene id: ENSG00000258231
Gene Name: RP11-362K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
671-692
0.032
1
RP11-232C2.3
hsa-miR-200c-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555954
Biotype: antisense
Gene id: ENSG00000258719
Gene Name: RP11-232C2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
266-288
0.029
4
6mer
558-581
0.004
1
CTD-2547L16.1
hsa-miR-200c-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521775
Biotype: antisense
Gene id: ENSG00000245281
Gene Name: CTD-2547L16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-56
0.025
0
6mer
100-119
0.007
2
XLOC_003038
hsa-miR-200c-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006435
Biotype: transcript isomorph
Gene id: XLOC_003038
Gene Name: XLOC_003038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-139
0.032
0
CTD-2547L16.1
hsa-miR-200c-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517798
Biotype: antisense
Gene id: ENSG00000245281
Gene Name: CTD-2547L16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17-34
0.025
0
6mer
78-97
0.007
2
LINC00643
hsa-miR-200c-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555518
Biotype: lincRNA
Gene id: ENSG00000186369
Gene Name: LINC00643
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
410-432
0.032
5
RASAL2-AS1
hsa-miR-200c-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421505
Biotype: lincRNA
Gene id: ENSG00000224687
Gene Name: RASAL2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1674-1700
0.024
3
6mer
119-145
0.005
1
6mer
1163-1189
0.003
2
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept