LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
RP11-307O13.1
hsa-miR-200c-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000568811
Biotype: lincRNA
Gene id: ENSG00000261728
Gene Name: RP11-307O13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
903-923
0.015
1
7mer
748-771
0.010
3
6mer
1695-1714
0.006
3
6mer
678-703
0.003
1
RP5-952N6.1
hsa-miR-200c-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000419450
Biotype: lincRNA
Gene id: ENSG00000229051
Gene Name: RP5-952N6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1813-1833
0.033
1
AF131215.3
hsa-miR-200c-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000526648
Biotype: sense_intronic
Gene id: ENSG00000254936
Gene Name: AF131215.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-46
0.014
1
7mer
1145-1165
0.014
1
6mer
271-291
0.006
1
XLOC_006964
hsa-miR-200c-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014550
Biotype: transcript isomorph
Gene id: XLOC_006964
Gene Name: XLOC_006964
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-153
0.020
1
7mer
817-835
0.008
0
7mer
294-312
0.005
Not Conserved
LINC00535
hsa-miR-200c-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520096
Biotype: antisense
Gene id: ENSG00000246662
Gene Name: LINC00535
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
641-661
0.033
1
RP5-842K16.1
hsa-miR-200c-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000461145
Biotype: lincRNA
Gene id: ENSG00000204990
Gene Name: RP5-842K16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-209
0.031
6
6mer
962-987
0.002
Not Conserved
RP11-382E9.1
hsa-miR-200c-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452199
Biotype: lincRNA
Gene id: ENSG00000231718
Gene Name: RP11-382E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1428-1448
0.024
1
7mer
1087-1101
0.005
1
6mer
1719-1739
0.002
0
6mer
1006-1032
0.002
1
RP11-211N8.2
hsa-miR-200c-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000420615
Biotype: lincRNA
Gene id: ENSG00000226007
Gene Name: RP11-211N8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
207-231
0.033
0
RP11-383H13.1
hsa-miR-200c-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000457356
Biotype: antisense
Gene id: ENSG00000235531
Gene Name: RP11-383H13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
364-382
0.019
1
7mer
3175-3186
0.008
1
6mer
3965-3989
0.004
0
6mer
2910-2936
0.002
0
NCOA7-AS1
hsa-miR-200c-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429007
Biotype: antisense
Gene id: ENSG00000232131
Gene Name: NCOA7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-152
0.033
1
ZNF667-AS1
hsa-miR-200c-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588158
Biotype: lincRNA
Gene id: ENSG00000166770
Gene Name: ZNF667-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
856-881
0.033
0
RP11-268E23.2
hsa-miR-200c-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609508
Biotype: lincRNA
Gene id: ENSG00000273370
Gene Name: RP11-268E23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-165
0.033
0
CLRN1-AS1
hsa-miR-200c-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465576
Biotype: antisense
Gene id: ENSG00000239265
Gene Name: CLRN1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
647-665
0.033
3
RP11-1017G21.6
hsa-miR-200c-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000607122
Biotype: lincRNA
Gene id: ENSG00000272444
Gene Name: RP11-1017G21.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
204-230
0.033
0
CTC-523E23.5
hsa-miR-200c-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601776
Biotype: lincRNA
Gene id: ENSG00000269086
Gene Name: CTC-523E23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5032-5057
0.017
0
7mer
5121-5138
0.015
0
6mer
3303-3319
0.001
0
HIF1A-AS2
hsa-miR-200c-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_045406.1
Biotype: antisense
Gene id: NR_045406.1 (gene)
Gene Name: HIF1A-AS2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-164
0.033
7
XLOC_005111
hsa-miR-200c-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00011109
Biotype: transcript isomorph
Gene id: XLOC_005111
Gene Name: XLOC_005111
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
900-925
0.033
1
RP11-73B2.7
hsa-miR-200c-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000593633
Biotype: retained_intron
Gene id: ENSG00000268181
Gene Name: RP11-73B2.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
279-302
0.027
1
6mer
162-185
0.006
1
MGC2889
hsa-miR-200c-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_026877.1
Biotype: sense
Gene id: NR_026877.1 (gene)
Gene Name: MGC2889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
692-716
0.030
1
6mer
1773-1787
0.003
0
RP11-2A4.4
hsa-miR-200c-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566529
Biotype: lincRNA
Gene id: ENSG00000261146
Gene Name: RP11-2A4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2810-2833
0.012
2
7mer
753-776
0.009
2
8mer
3609-3622
0.009
1
6mer
3721-3740
0.002
1
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