LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
XLOC_002720
hsa-miR-200c-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006111
Biotype: transcript isomorph
Gene id: XLOC_002720
Gene Name: XLOC_002720
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
249-272
0.020
0
7mer
703-730
0.015
0
RP1-278O22.2
hsa-miR-200c-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000418690
Biotype: lincRNA
Gene id: ENSG00000234900
Gene Name: RP1-278O22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
217-234
0.035
0
AL157902.3
hsa-miR-200c-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425010
Biotype: antisense
Gene id: ENSG00000236866
Gene Name: AL157902.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
514-534
0.019
1
7mer
37-55
0.010
2
6mer
334-359
0.006
3
RP3-465N24.6
hsa-miR-200c-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607698
Biotype: lincRNA
Gene id: ENSG00000272432
Gene Name: RP3-465N24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
232-258
0.035
1
XLOC_006867
hsa-miR-200c-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014791
Biotype: transcript isomorph
Gene id: XLOC_006867
Gene Name: XLOC_006867
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
551-573
0.029
0
6mer
201-228
0.006
0
RP11-10E18.7
hsa-miR-200c-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000622881
Biotype: sense_intronic
Gene id: ENSG00000276809
Gene Name: RP11-10E18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
265-288
0.029
2
6mer
572-593
0.006
1
KIZ-AS1
hsa-miR-200c-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000443753
Biotype: antisense
Gene id: ENSG00000232712
Gene Name: KIZ-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
297-319
0.018
1
7mer
442-461
0.016
0
RP4-714D9.5
hsa-miR-200c-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564623
Biotype: sense_overlapping
Gene id: ENSG00000261254
Gene Name: RP4-714D9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4924-4941
0.019
1
6mer
26-46
0.008
2
6mer
4575-4599
0.003
0
6mer
2862-2875
0.003
1
6mer
3341-3356
0.002
1
XLOC_008031
hsa-miR-200c-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017436
Biotype: transcript isomorph
Gene id: XLOC_008031
Gene Name: XLOC_008031
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-28
0.034
0
XLOC_004053
hsa-miR-200c-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008556
Biotype: transcript isomorph
Gene id: XLOC_004053
Gene Name: XLOC_004053
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-341
0.018
1
6mer
3079-3100
0.006
1
6mer
160-183
0.004
0
6mer
566-583
0.003
0
6mer
2147-2168
0.002
Not Conserved
FLJ46284
hsa-miR-200c-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000623616
Biotype: TEC
Gene id: ENSG00000248858
Gene Name: FLJ46284
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3797-3821
0.015
1
7mer
745-767
0.013
0
6mer
4045-4066
0.004
Not Conserved
6mer
627-641
0.002
0
RP11-471M2.3
hsa-miR-200c-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000606221
Biotype: lincRNA
Gene id: ENSG00000272046
Gene Name: RP11-471M2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-48
0.024
1
6mer
365-390
0.005
0
6mer
1076-1085
0.003
1
6mer
1445-1469
0.002
1
RP11-545I5.3
hsa-miR-200c-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038246.1
Biotype: antisense
Gene id: NR_038246.1 (gene)
Gene Name: RP11-545I5.3
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-218
0.014
1
7mer
1089-1111
0.009
1
7mer
1650-1668
0.005
2
6mer
3076-3102
0.003
2
6mer
2490-2510
0.003
1
XLOC_009517
hsa-miR-200c-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019720
Biotype: transcript isomorph
Gene id: XLOC_009517
Gene Name: XLOC_009517
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
975-994
0.034
0
RP11-80F22.15
hsa-miR-200c-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562591
Biotype: lincRNA
Gene id: ENSG00000260857
Gene Name: RP11-80F22.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-203
0.034
0
RP11-441O15.3
hsa-miR-200c-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000416191
Biotype: lincRNA
Gene id: ENSG00000224934
Gene Name: RP11-441O15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2965-2984
0.027
2
6mer
2055-2076
0.003
0
6mer
1564-1588
0.002
3
6mer
1191-1199
0.002
1
XLOC_012370
hsa-miR-200c-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025543
Biotype: transcript isomorph
Gene id: XLOC_012370
Gene Name: XLOC_012370
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1182-1204
0.022
0
6mer
1307-1325
0.012
0
RP11-111F5.4
hsa-miR-200c-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000377518
Biotype: retained_intron
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1227-1251
0.023
0
6mer
1641-1667
0.010
0
LINC00643
hsa-miR-200c-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000334389
Biotype: lincRNA
Gene id: ENSG00000186369
Gene Name: LINC00643
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
188-210
0.030
5
6mer
2263-2279
0.003
1
6mer
2298-2324
0.001
0
RP11-362K2.2
hsa-miR-200c-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552519
Biotype: lincRNA
Gene id: ENSG00000258231
Gene Name: RP11-362K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
535-556
0.034
1
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