LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
RP11-730G20.1
hsa-miR-200c-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522127
Biotype: antisense
Gene id: ENSG00000254080
Gene Name: RP11-730G20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-74
0.021
1
7mer
152-163
0.015
1
LINC00994
hsa-miR-200c-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000485805
Biotype: lincRNA
Gene id: ENSG00000189196
Gene Name: LINC00994
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2087-2103
0.018
1
7mer
1201-1223
0.006
3
6mer
299-315
0.005
1
6mer
1570-1587
0.004
1
6mer
747-769
0.002
1
DLEU1
hsa-miR-200c-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_002605.2
Biotype: sense
Gene id: NR_002605.2 (gene)
Gene Name: DLEU1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
592-609
0.019
1
7mer
1970-1987
0.007
1
6mer
2606-2632
0.006
1
6mer
482-495
0.004
1
RP5-965G21.4
hsa-miR-200c-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000618303
Biotype: lincRNA
Gene id: ENSG00000274414
Gene Name: RP5-965G21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2247-2265
0.036
0
AC004053.1
hsa-miR-200c-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500179
Biotype: antisense
Gene id: ENSG00000245384
Gene Name: AC004053.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
612-636
0.013
0
7mer
1600-1621
0.008
3
7mer
1252-1279
0.005
0
6mer
309-325
0.005
1
6mer
888-909
0.002
1
6mer
1399-1420
0.001
1
6mer
1330-1345
0.001
0
XXbac-BPG308K3.6
hsa-miR-200c-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606624
Biotype: lincRNA
Gene id: ENSG00000225595
Gene Name: XXbac-BPG308K3.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-72
0.036
1
XLOC_000246
hsa-miR-200c-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000044
Biotype: transcript isomorph
Gene id: XLOC_000246
Gene Name: XLOC_000246
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1892-1912
0.036
1
RP11-434I12.2
hsa-miR-200c-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514599
Biotype: antisense
Gene id: ENSG00000250295
Gene Name: RP11-434I12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2528-2550
0.013
1
7mer
1112-1131
0.009
2
6mer
81-93
0.006
1
6mer
178-193
0.005
4
6mer
1517-1536
0.002
2
AL132709.8
hsa-miR-200c-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000442197
Biotype: lincRNA
Gene id: ENSG00000232018
Gene Name: AL132709.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
558-578
0.018
1
7mer
429-450
0.011
1
6mer
369-379
0.004
1
6mer
189-211
0.003
Not Conserved
LINC00581
hsa-miR-200c-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_103790.1
Biotype: lincRNA
Gene id: NR_103790.1 (gene)
Gene Name: LINC00581
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-72
0.016
0
7mer
191-208
0.013
0
6mer
63-83
0.007
0
CTD-2521M24.9
hsa-miR-200c-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601885
Biotype: lincRNA
Gene id: ENSG00000269640
Gene Name: CTD-2521M24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
635-662
0.020
1
7mer
967-980
0.015
1
RP11-571I18.5
hsa-miR-200c-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000595906
Biotype: antisense
Gene id: ENSG00000269506
Gene Name: RP11-571I18.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1160-1182
0.030
1
6mer
63-87
0.005
0
DYX1C1-CCPG1
hsa-miR-200c-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568310
Biotype: processed_transcript
Gene id: ENSG00000261771
Gene Name: DYX1C1-CCPG1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
568-589
0.027
3
7mer
596-613
0.006
2
6mer
543-564
0.002
4
XLOC_000318
hsa-miR-200c-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001079
Biotype: transcript isomorph
Gene id: XLOC_000318
Gene Name: XLOC_000318
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
912-934
0.011
1
7mer
8569-8580
0.010
2
6mer
8798-8817
0.004
0
6mer
1226-1240
0.002
2
6mer
4885-4908
0.002
1
6mer
5684-5707
0.002
1
6mer
4709-4720
0.002
1
7mer
5710-5733
0.002
1
CTD-2521M24.9
hsa-miR-200c-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000534306
Biotype: lincRNA
Gene id: ENSG00000269640
Gene Name: CTD-2521M24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1221-1234
0.018
1
7mer
889-916
0.017
1
EPB41L4A-AS1
hsa-miR-200c-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000413221
Biotype: lincRNA
Gene id: ENSG00000224032
Gene Name: EPB41L4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2912-2928
0.025
2
7mer
1074-1090
0.006
0
6mer
2664-2686
0.004
1
DLEU1
hsa-miR-200c-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_109973.1
Biotype: sense
Gene id: NR_109973.1 (gene)
Gene Name: DLEU1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
645-662
0.018
1
6mer
2659-2685
0.006
1
7mer
2023-2040
0.006
1
6mer
535-548
0.005
1
RP11-529E10.6
hsa-miR-200c-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000564650
Biotype: sense_overlapping
Gene id: ENSG00000261643
Gene Name: RP11-529E10.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-256
0.035
0
CTD-2303H24.2
hsa-miR-200c-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000425211
Biotype: processed_transcript
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4672-4695
0.020
1
7mer
116-137
0.012
Not Conserved
6mer
4467-4493
0.003
1
RP11-328C8.5
hsa-miR-200c-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547898
Biotype: sense_intronic
Gene id: ENSG00000258068
Gene Name: RP11-328C8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-249
0.035
0
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