LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
HOXB-AS1
hsa-miR-200c-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000504972
Biotype: antisense
Gene id: ENSG00000230148
Gene Name: HOXB-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-166
0.037
1
XLOC_004267
hsa-miR-200c-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009232
Biotype: transcript isomorph
Gene id: XLOC_004267
Gene Name: XLOC_004267
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
103-122
0.031
0
6mer
844-858
0.006
0
RP11-510D19.1
hsa-miR-200c-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000566582
Biotype: lincRNA
Gene id: ENSG00000260676
Gene Name: RP11-510D19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1522-1546
0.022
1
7mer
1886-1900
0.009
1
6mer
1996-2017
0.003
0
6mer
1164-1190
0.003
2
LINC00641
hsa-miR-200c-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555379
Biotype: retained_intron
Gene id: ENSG00000258441
Gene Name: LINC00641
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-309
0.022
1
6mer
119-140
0.006
0
7mer
3698-3721
0.005
0
6mer
1133-1149
0.002
1
6mer
4815-4840
0.002
1
RP11-80F22.15
hsa-miR-200c-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_034018.1
Biotype: lincRNA
Gene id: NR_034018.1 (gene)
Gene Name: RP11-80F22.15
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-209
0.037
0
RP11-394I13.2
hsa-miR-200c-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000605739
Biotype: lincRNA
Gene id: ENSG00000271151
Gene Name: RP11-394I13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
646-662
0.025
0
7mer
769-788
0.012
0
KB-1205A7.2
hsa-miR-200c-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517397
Biotype: antisense
Gene id: ENSG00000253911
Gene Name: KB-1205A7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
272-288
0.037
1
KB-1592A4.14
hsa-miR-200c-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000417463
Biotype: lincRNA
Gene id: ENSG00000234503
Gene Name: KB-1592A4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
429-455
0.037
1
RP11-775H9.3
hsa-miR-200c-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000569694
Biotype: lincRNA
Gene id: ENSG00000261166
Gene Name: RP11-775H9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1000-1026
0.030
0
6mer
301-319
0.006
0
RP11-97E7.2
hsa-miR-200c-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508977
Biotype: lincRNA
Gene id: ENSG00000249297
Gene Name: RP11-97E7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-78
0.036
0
XLOC_001200
hsa-miR-200c-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001819
Biotype: transcript isomorph
Gene id: XLOC_001200
Gene Name: XLOC_001200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
916-935
0.008
0
6mer
9452-9470
0.005
1
6mer
9376-9402
0.005
0
6mer
317-341
0.004
1
7mer
5081-5105
0.004
1
6mer
2608-2632
0.002
1
6mer
4870-4895
0.002
0
6mer
4422-4441
0.002
1
6mer
7769-7794
0.002
1
6mer
7170-7186
0.002
0
6mer
6908-6917
0.001
0
RP6-24A23.7
hsa-miR-200c-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000564206
Biotype: sense_overlapping
Gene id: ENSG00000261409
Gene Name: RP6-24A23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
404-427
0.016
9
6mer
4861-4877
0.006
2
6mer
4084-4106
0.003
Not Conserved
7mer
2070-2093
0.003
1
6mer
506-528
0.003
0
6mer
1801-1820
0.002
1
7mer
1995-2019
0.002
1
ZNRD1-AS1
hsa-miR-200c-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5874-5894
0.010
1
6mer
9599-9624
0.009
1
7mer
2999-3020
0.007
0
6mer
9021-9035
0.006
1
6mer
4831-4858
0.003
0
6mer
6877-6901
0.002
0
RP11-731J8.2
hsa-miR-200c-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000562284
Biotype: sense_overlapping
Gene id: ENSG00000260918
Gene Name: RP11-731J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
112-128
0.013
2
7mer
6178-6203
0.009
0
6mer
6831-6851
0.005
2
6mer
5552-5572
0.004
5
6mer
5358-5381
0.002
3
6mer
3602-3621
0.002
1
6mer
2129-2148
0.002
1
CTD-3105H18.13
hsa-miR-200c-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000563695
Biotype: lincRNA
Gene id: ENSG00000261280
Gene Name: CTD-3105H18.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
177-198
0.017
1
6mer
1226-1242
0.011
1
6mer
1941-1962
0.009
0
CTD-3185P2.1
hsa-miR-200c-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565387
Biotype: antisense
Gene id: ENSG00000261351
Gene Name: CTD-3185P2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1486-1504
0.028
2
8mer
1397-1419
0.008
2
CASC7
hsa-miR-200c-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7161-7181
0.031
8
6mer
3122-3142
0.002
2
6mer
1887-1909
0.002
1
6mer
7505-7527
0.001
0
XLOC_009474
hsa-miR-200c-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4019-4041
0.013
5
7mer
6718-6734
0.009
Not Conserved
6mer
201-224
0.005
1
7mer
5049-5075
0.004
0
6mer
442-462
0.003
1
6mer
3506-3527
0.001
0
RP11-523L1.2
hsa-miR-200c-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423637
Biotype: lincRNA
Gene id: ENSG00000236461
Gene Name: RP11-523L1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1240-1263
0.034
1
6mer
708-729
0.002
Not Conserved
FAM138C
hsa-miR-200c-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000305248
Biotype: lincRNA
Gene id: ENSG00000218839
Gene Name: FAM138C
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-105
0.036
2
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