LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
FLJ22763
hsa-miR-200b-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000477643
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-99
0.057
4
CTD-2201E18.3
hsa-miR-200b-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503152
Biotype: sense_overlapping
Gene id: ENSG00000177738
Gene Name: CTD-2201E18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
424-443
0.057
1
RP11-411K7.1
hsa-miR-200b-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431554
Biotype: lincRNA
Gene id: ENSG00000236740
Gene Name: RP11-411K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2811-2830
0.048
1
7mer
2513-2526
0.008
1
RP11-839D17.3
hsa-miR-200b-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526487
Biotype: antisense
Gene id: ENSG00000255129
Gene Name: RP11-839D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-492
0.052
1
6mer
390-409
0.004
2
GS1-120K12.4
hsa-miR-200b-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566476
Biotype: lincRNA
Gene id: ENSG00000260976
Gene Name: GS1-120K12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1042-1069
0.056
1
RP11-69C17.3
hsa-miR-200b-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421077
Biotype: lincRNA
Gene id: ENSG00000227912
Gene Name: RP11-69C17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2222-2230
0.035
7
7mer
383-403
0.018
1
6mer
1988-2001
0.003
0
RP11-111F5.4
hsa-miR-200b-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430302
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-36
0.056
0
CTD-2213F21.2
hsa-miR-200b-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000502430
Biotype: antisense
Gene id: ENSG00000250365
Gene Name: CTD-2213F21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1118-1138
0.056
1
XLOC_013275
hsa-miR-200b-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027244
Biotype: transcript isomorph
Gene id: XLOC_013275
Gene Name: XLOC_013275
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-458
0.056
0
FLJ22763
hsa-miR-200b-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_033977.1
Biotype: lincRNA
Gene id: NR_033977.1 (gene)
Gene Name: FLJ22763
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1662-1676
0.044
4
6mer
1456-1467
0.005
0
6mer
211-226
0.003
0
6mer
915-927
0.003
0
RP11-839D17.3
hsa-miR-200b-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529416
Biotype: antisense
Gene id: ENSG00000255129
Gene Name: RP11-839D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
587-612
0.051
1
6mer
506-525
0.004
2
PRKG1-AS1
hsa-miR-200b-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038277.1
Biotype: antisense
Gene id: NR_038277.1 (gene)
Gene Name: PRKG1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1976-1990
0.055
4
FLJ22763
hsa-miR-200b-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000593799
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-152
0.055
4
RP11-397A16.3
hsa-miR-200b-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585985
Biotype: lincRNA
Gene id: ENSG00000267172
Gene Name: RP11-397A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
503-516
0.022
1
6mer
296-312
0.012
1
6mer
346-357
0.009
1
6mer
354-375
0.007
1
6mer
309-329
0.005
0
RP11-115H18.1
hsa-miR-200b-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609293
Biotype: lincRNA
Gene id: ENSG00000273125
Gene Name: RP11-115H18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
805-818
0.038
5
7mer
1091-1104
0.017
1
FLJ22763
hsa-miR-200b-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467240
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1662-1676
0.043
4
6mer
1456-1467
0.005
0
6mer
211-226
0.003
0
6mer
915-927
0.003
0
LHX5-AS1
hsa-miR-200b-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551357
Biotype: antisense
Gene id: ENSG00000257935
Gene Name: LHX5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-45
0.029
10
7mer
36-55
0.025
7
RP11-4L24.3
hsa-miR-200b-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000619442
Biotype: lincRNA
Gene id: ENSG00000275450
Gene Name: RP11-4L24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-113
0.035
0
7mer
2039-2044
0.008
0
7mer
2399-2410
0.008
0
7mer
2067-2087
0.003
0
RP11-705O24.3
hsa-miR-200b-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518489
Biotype: lincRNA
Gene id: ENSG00000253834
Gene Name: RP11-705O24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
440-463
0.054
1
FLJ22763
hsa-miR-200b-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000619765
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-263
0.054
4
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