LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
XLOC_001532
hsa-miR-200b-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003733
Biotype: transcript isomorph
Gene id: XLOC_001532
Gene Name: XLOC_001532
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-799
0.025
1
AL157359.4
hsa-miR-200b-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000440372
Biotype: lincRNA
Gene id: ENSG00000232193
Gene Name: AL157359.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
201-214
0.025
1
RP11-474P2.4
hsa-miR-200b-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552634
Biotype: lincRNA
Gene id: ENSG00000257496
Gene Name: RP11-474P2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-118
0.025
1
XLOC_014386
hsa-miR-200b-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029913
Biotype: transcript isomorph
Gene id: XLOC_014386
Gene Name: XLOC_014386
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
177-189
0.019
1
6mer
69-90
0.006
0
CTD-2636A23.2
hsa-miR-200b-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000569313
Biotype: antisense
Gene id: ENSG00000261604
Gene Name: CTD-2636A23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
179-197
0.019
6
7mer
58-82
0.007
2
LRRC75A-AS1
hsa-miR-200b-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000497774
Biotype: retained_intron
Gene id: ENSG00000175061
Gene Name: LRRC75A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-209
0.023
0
6mer
932-955
0.002
1
RP11-383H13.1
hsa-miR-200b-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518700
Biotype: antisense
Gene id: ENSG00000235531
Gene Name: RP11-383H13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-242
0.025
1
LINC01102
hsa-miR-200b-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000429464
Biotype: lincRNA
Gene id: ENSG00000235597
Gene Name: LINC01102
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2001-2027
0.014
0
6mer
1445-1471
0.004
0
6mer
1131-1141
0.003
2
6mer
464-488
0.003
0
6mer
1175-1186
0.001
2
CSTF3-AS1
hsa-miR-200b-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000500025
Biotype: antisense
Gene id: ENSG00000247151
Gene Name: CSTF3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1325-1338
0.025
5
WDR86-AS1
hsa-miR-200b-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_034012.2
Biotype: antisense
Gene id: NR_034012.2 (gene)
Gene Name: WDR86-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
798-824
0.025
1
XLOC_009222
hsa-miR-200b-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6123-6148
0.020
0
6mer
2474-2484
0.005
0
RP11-99C10.1
hsa-miR-200b-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527345
Biotype: lincRNA
Gene id: ENSG00000254830
Gene Name: RP11-99C10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
227-248
0.025
0
RP11-86H7.6
hsa-miR-200b-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413541
Biotype: lincRNA
Gene id: ENSG00000223675
Gene Name: RP11-86H7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
435-450
0.013
4
7mer
359-379
0.012
1
RP11-265N7.2
hsa-miR-200b-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560259
Biotype: lincRNA
Gene id: ENSG00000259423
Gene Name: RP11-265N7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9-36
0.025
0
SOX2-OT
hsa-miR-200b-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599082
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
164-188
0.019
4
6mer
500-519
0.006
3
XLOC_007193
hsa-miR-200b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015150
Biotype: transcript isomorph
Gene id: XLOC_007193
Gene Name: XLOC_007193
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
701-722
0.025
1
LINC01140
hsa-miR-200b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000471417
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
663-686
0.025
4
LINC00892
hsa-miR-200b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000454385
Biotype: antisense
Gene id: ENSG00000233093
Gene Name: LINC00892
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
465-484
0.025
2
AC139099.6
hsa-miR-200b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574856
Biotype: lincRNA
Gene id: ENSG00000262952
Gene Name: AC139099.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-347
0.025
0
XLOC_010853
hsa-miR-200b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022327
Biotype: transcript isomorph
Gene id: XLOC_010853
Gene Name: XLOC_010853
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
348-375
0.025
5
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