LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
RP11-154D6.1
hsa-miR-200b-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434683
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-120
0.026
4
XLOC_000540
hsa-miR-200b-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001252
Biotype: transcript isomorph
Gene id: XLOC_000540
Gene Name: XLOC_000540
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
265-285
0.014
0
6mer
287-311
0.008
1
6mer
465-480
0.004
0
RP11-531A24.3
hsa-miR-200b-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000564832
Biotype: lincRNA
Gene id: ENSG00000260838
Gene Name: RP11-531A24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2723-2735
0.009
4
6mer
3081-3107
0.005
2
6mer
1157-1179
0.004
7
6mer
2593-2612
0.004
3
6mer
1475-1501
0.002
1
6mer
1203-1222
0.001
1
RP11-85I21.1
hsa-miR-200b-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000484222
Biotype: lincRNA
Gene id: ENSG00000241884
Gene Name: RP11-85I21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1397-1415
0.014
3
6mer
1989-2006
0.007
1
6mer
1661-1676
0.004
1
BAALC-AS1
hsa-miR-200b-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520025
Biotype: antisense
Gene id: ENSG00000247081
Gene Name: BAALC-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
89-102
0.026
1
XLOC_007141
hsa-miR-200b-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015064
Biotype: transcript isomorph
Gene id: XLOC_007141
Gene Name: XLOC_007141
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
798-812
0.026
0
RP11-809F4.3
hsa-miR-200b-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562617
Biotype: lincRNA
Gene id: ENSG00000260217
Gene Name: RP11-809F4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
88-106
0.017
1
6mer
867-887
0.009
1
AC003984.1
hsa-miR-200b-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450977
Biotype: lincRNA
Gene id: ENSG00000235139
Gene Name: AC003984.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
508-521
0.011
1
7mer
235-262
0.008
1
7mer
2648-2669
0.006
1
6mer
2889-2901
0.002
0
XLOC_002282
hsa-miR-200b-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003380
Biotype: transcript isomorph
Gene id: XLOC_002282
Gene Name: XLOC_002282
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
863-880
0.016
0
6mer
251-266
0.008
3
6mer
1122-1142
0.002
1
TTTY15
hsa-miR-200b-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
357-367
0.016
0
6mer
635-654
0.010
0
RP11-613F22.8
hsa-miR-200b-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000539313
Biotype: sense_intronic
Gene id: ENSG00000256588
Gene Name: RP11-613F22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-164
0.026
1
RP11-573G6.6
hsa-miR-200b-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000566763
Biotype: lincRNA
Gene id: ENSG00000261671
Gene Name: RP11-573G6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-106
0.026
4
XLOC_008411
hsa-miR-200b-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018135
Biotype: transcript isomorph
Gene id: XLOC_008411
Gene Name: XLOC_008411
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1281-1301
0.026
1
RP11-646J21.6
hsa-miR-200b-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528779
Biotype: antisense
Gene id: ENSG00000255272
Gene Name: RP11-646J21.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-347
0.026
0
RP1-79C4.1
hsa-miR-200b-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413005
Biotype: lincRNA
Gene id: ENSG00000235303
Gene Name: RP1-79C4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1863-1876
0.018
1
6mer
89-112
0.008
1
RP11-260M2.1
hsa-miR-200b-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608095
Biotype: antisense
Gene id: ENSG00000272807
Gene Name: RP11-260M2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
540-552
0.016
3
6mer
420-442
0.009
8
LINC01490
hsa-miR-200b-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551399
Biotype: lincRNA
Gene id: ENSG00000257741
Gene Name: LINC01490
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
327-351
0.010
1
8mer+wobble
1143-1160
0.009
1
6mer
689-712
0.007
5
RP11-278C7.3
hsa-miR-200b-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000620472
Biotype: sense_intronic
Gene id: ENSG00000274105
Gene Name: RP11-278C7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-249
0.018
1
6mer
279-298
0.008
2
MACC1-AS1
hsa-miR-200b-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439285
Biotype: antisense
Gene id: ENSG00000228598
Gene Name: MACC1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
122-147
0.018
4
7mer
287-300
0.007
0
INTS6-AS1
hsa-miR-200b-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000601034
Biotype: antisense
Gene id: ENSG00000236778
Gene Name: INTS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1833-1853
0.005
0
7mer
1711-1738
0.004
0
6mer
2670-2679
0.004
1
7mer
1844-1859
0.003
0
7mer
1861-1878
0.003
0
7mer
1850-1869
0.003
Not Conserved
7mer
1779-1798
0.002
0
6mer
1765-1778
0.001
2
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