LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
RP11-506K6.4
hsa-miR-200b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607565
Biotype: antisense
Gene id: ENSG00000272320
Gene Name: RP11-506K6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1621-1641
0.027
1
FAM138F
hsa-miR-200b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586011
Biotype: lincRNA
Gene id: ENSG00000233630
Gene Name: FAM138F
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
656-675
0.020
1
7mer
449-472
0.006
0
CTB-171A8.1
hsa-miR-200b-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586169
Biotype: antisense
Gene id: ENSG00000266903
Gene Name: CTB-171A8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
57-66
0.027
1
RP11-613D13.5
hsa-miR-200b-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499066
Biotype: antisense
Gene id: ENSG00000246250
Gene Name: RP11-613D13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-138
0.012
0
7mer
182-203
0.011
1
6mer
281-299
0.003
1
RP11-764K9.1
hsa-miR-200b-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417843
Biotype: lincRNA
Gene id: ENSG00000225411
Gene Name: RP11-764K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2230-2254
0.027
0
CASC14
hsa-miR-200b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000566912
Biotype: lincRNA
Gene id: ENSG00000260455
Gene Name: CASC14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
333-348
0.016
2
7mer
991-1007
0.010
3
XLOC_005715
hsa-miR-200b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012166
Biotype: transcript isomorph
Gene id: XLOC_005715
Gene Name: XLOC_005715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1162-1179
0.018
1
6mer
217-235
0.005
0
6mer
549-568
0.003
1
LINC00564
hsa-miR-200b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000567258
Biotype: lincRNA
Gene id: ENSG00000260094
Gene Name: LINC00564
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
295-316
0.011
0
6mer
505-532
0.007
3
6mer
264-281
0.005
0
6mer
666-688
0.004
0
RP11-464D20.6
hsa-miR-200b-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583426
Biotype: sense_intronic
Gene id: ENSG00000264546
Gene Name: RP11-464D20.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1395-1420
0.016
0
7mer
1309-1314
0.011
0
LINC00632
hsa-miR-200b-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000607004
Biotype: lincRNA
Gene id: ENSG00000203930
Gene Name: LINC00632
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
617-636
0.026
1
RP11-380D23.1
hsa-miR-200b-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503998
Biotype: antisense
Gene id: ENSG00000250511
Gene Name: RP11-380D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1122-1141
0.026
1
CTD-2235C13.3
hsa-miR-200b-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607296
Biotype: lincRNA
Gene id: ENSG00000271815
Gene Name: CTD-2235C13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-482
0.026
2
XLOC_009818
hsa-miR-200b-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020191
Biotype: transcript isomorph
Gene id: XLOC_009818
Gene Name: XLOC_009818
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
414-438
0.010
1
8mer+wobble
1230-1247
0.009
1
6mer
776-799
0.007
5
LINC00643
hsa-miR-200b-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000623219
Biotype: lincRNA
Gene id: ENSG00000186369
Gene Name: LINC00643
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
326-353
0.026
5
RP11-278I4.2
hsa-miR-200b-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518362
Biotype: antisense
Gene id: ENSG00000254278
Gene Name: RP11-278I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
432-453
0.021
1
6mer
134-154
0.005
3
RP11-73K9.2
hsa-miR-200b-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000562919
Biotype: antisense
Gene id: ENSG00000260526
Gene Name: RP11-73K9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
334-351
0.011
1
7mer
737-762
0.007
0
7mer
932-950
0.005
0
6mer
1026-1041
0.003
1
LRRC2-AS1
hsa-miR-200b-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599511
Biotype: antisense
Gene id: ENSG00000268324
Gene Name: LRRC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-174
0.017
1
6mer
2177-2203
0.006
0
6mer
1624-1640
0.003
Not Conserved
RP11-82L18.2
hsa-miR-200b-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000456944
Biotype: sense_intronic
Gene id: ENSG00000224945
Gene Name: RP11-82L18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
458-478
0.026
0
RP3-399L15.3
hsa-miR-200b-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000523087
Biotype: antisense
Gene id: ENSG00000228624
Gene Name: RP3-399L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-357
0.026
1
RP11-154D6.1
hsa-miR-200b-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000590780
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-120
0.026
4
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