LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
RP11-479O17.10
hsa-miR-200b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608229
Biotype: lincRNA
Gene id: ENSG00000273372
Gene Name: RP11-479O17.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4930-4945
0.012
Not Conserved
8mer
179-204
0.008
Not Conserved
6mer
3039-3053
0.003
0
6mer
3218-3223
0.002
0
6mer
1532-1555
0.001
Not Conserved
XLOC_001546
hsa-miR-200b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003749
Biotype: transcript isomorph
Gene id: XLOC_001546
Gene Name: XLOC_001546
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
272-292
0.027
1
PSMD5-AS1
hsa-miR-200b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000612398
Biotype: antisense
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-398
0.020
1
7mer
142-163
0.007
0
RP11-384P7.7
hsa-miR-200b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566968
Biotype: lincRNA
Gene id: ENSG00000260947
Gene Name: RP11-384P7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2409-2425
0.009
1
6mer
3106-3128
0.007
1
6mer
892-918
0.004
1
7mer
2409-2431
0.004
0
6mer
2594-2617
0.004
1
RP11-1072C15.4
hsa-miR-200b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591628
Biotype: antisense
Gene id: ENSG00000267160
Gene Name: RP11-1072C15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2061-2072
0.010
1
6mer
113-138
0.007
0
6mer
1336-1363
0.005
9
6mer
621-641
0.003
1
6mer
1047-1060
0.002
Not Conserved
CTD-2647L4.4
hsa-miR-200b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560865
Biotype: sense_intronic
Gene id: ENSG00000259366
Gene Name: CTD-2647L4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
414-431
0.027
0
XLOC_011368
hsa-miR-200b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023532
Biotype: transcript isomorph
Gene id: XLOC_011368
Gene Name: XLOC_011368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
827-846
0.010
3
6mer
3697-3723
0.006
1
7mer
286-299
0.006
0
6mer
269-289
0.004
Not Conserved
6mer
1932-1952
0.002
1
XLOC_009913
hsa-miR-200b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020238
Biotype: transcript isomorph
Gene id: XLOC_009913
Gene Name: XLOC_009913
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
290-305
0.016
4
7mer
800-817
0.006
0
6mer
166-190
0.005
1
RP11-9N12.2
hsa-miR-200b-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000625026
Biotype: antisense
Gene id: ENSG00000278981
Gene Name: RP11-9N12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-132
0.024
4
6mer
1178-1201
0.003
0
SNHG14
hsa-miR-200b-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000551631
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1679-1686
0.022
1
6mer
945-970
0.005
2
RP4-784A16.1
hsa-miR-200b-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432653
Biotype: antisense
Gene id: ENSG00000234578
Gene Name: RP4-784A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
397-418
0.027
1
XLOC_010406
hsa-miR-200b-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021807
Biotype: transcript isomorph
Gene id: XLOC_010406
Gene Name: XLOC_010406
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
118-135
0.027
0
XLOC_004363
hsa-miR-200b-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009935
Biotype: transcript isomorph
Gene id: XLOC_004363
Gene Name: XLOC_004363
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
937-948
0.008
0
6mer
1856-1873
0.007
0
6mer
1652-1672
0.006
0
6mer
1345-1364
0.005
0
RP11-1060J15.4
hsa-miR-200b-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536317
Biotype: antisense
Gene id: ENSG00000256377
Gene Name: RP11-1060J15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
806-825
0.023
1
6mer
333-347
0.004
2
XLOC_003567
hsa-miR-200b-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007360
Biotype: transcript isomorph
Gene id: XLOC_003567
Gene Name: XLOC_003567
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
173-197
0.021
0
6mer
112-125
0.006
2
XLOC_007942
hsa-miR-200b-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016971
Biotype: transcript isomorph
Gene id: XLOC_007942
Gene Name: XLOC_007942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5700-5720
0.011
1
8mer
3274-3299
0.007
1
7mer
2798-2809
0.005
1
7mer
5336-5360
0.002
1
6mer
5271-5286
0.002
1
LOC101927811
hsa-miR-200b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110120.1
Biotype: antisense
Gene id: NR_110120.1 (gene)
Gene Name: LOC101927811
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-78
0.027
1
LINC01446
hsa-miR-200b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000380970
Biotype: lincRNA
Gene id: ENSG00000205628
Gene Name: LINC01446
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
607-632
0.023
0
6mer
576-596
0.003
1
LINC00837
hsa-miR-200b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443246
Biotype: lincRNA
Gene id: ENSG00000235824
Gene Name: LINC00837
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-200
0.023
5
6mer
576-590
0.004
0
MCM3AP-AS1
hsa-miR-200b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000414659
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2107-2133
0.018
0
8mer
2268-2287
0.009
1
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