LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
XLOC_004725
hsa-miR-200b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009596
Biotype: transcript isomorph
Gene id: XLOC_004725
Gene Name: XLOC_004725
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3119-3139
0.015
0
7mer
3467-3475
0.011
1
6mer
2419-2435
0.001
Not Conserved
NEAT1
hsa-miR-200b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11783-11788
0.006
1
7mer
15828-15852
0.004
Not Conserved
7mer
5481-5499
0.003
1
7mer
10124-10146
0.003
0
6mer
14207-14233
0.003
2
6mer
18752-18779
0.002
2
6mer
17424-17438
0.002
0
6mer
8320-8341
0.001
1
6mer
3866-3893
0.001
0
6mer
8622-8640
0.001
0
6mer
3520-3542
0.001
1
RP11-977G19.11
hsa-miR-200b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549860
Biotype: antisense
Gene id: ENSG00000257303
Gene Name: RP11-977G19.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
276-293
0.027
6
MALAT1
hsa-miR-200b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5445-5457
0.008
5
7mer
3443-3464
0.003
0
6mer
7969-7988
0.003
Not Conserved
6mer
1079-1095
0.002
0
6mer
3920-3937
0.002
4
6mer
7296-7318
0.002
1
6mer
4604-4627
0.002
2
6mer
4409-4419
0.002
1
6mer
3334-3359
0.002
1
8mer+mismatch
4901-4921
0.002
2
RP11-526A4.1
hsa-miR-200b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511993
Biotype: lincRNA
Gene id: ENSG00000234828
Gene Name: RP11-526A4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
421-441
0.027
1
TRHDE-AS1
hsa-miR-200b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549957
Biotype: retained_intron
Gene id: ENSG00000236333
Gene Name: TRHDE-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
661-674
0.010
1
6mer
4374-4388
0.005
0
7mer
1613-1634
0.004
1
6mer
438-448
0.004
1
7mer
3195-3216
0.004
1
6mer
3653-3667
0.002
0
RP11-410E4.1
hsa-miR-200b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000564407
Biotype: lincRNA
Gene id: ENSG00000259915
Gene Name: RP11-410E4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
506-512
0.020
1
8mer
1204-1225
0.007
1
DKFZp566F0947
hsa-miR-200b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_026894.1
Biotype: lincRNA
Gene id: NR_026894.1 (gene)
Gene Name: DKFZp566F0947
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-61
0.027
1
PSMD5-AS1
hsa-miR-200b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000611982
Biotype: antisense
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
418-437
0.019
1
7mer
34-55
0.008
0
RP11-230F18.5
hsa-miR-200b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000619092
Biotype: sense_intronic
Gene id: ENSG00000276248
Gene Name: RP11-230F18.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2680-2705
0.016
0
6mer
2997-3012
0.005
0
6mer
350-373
0.004
0
6mer
1116-1139
0.003
0
NIFK-AS1
hsa-miR-200b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439321
Biotype: antisense
Gene id: ENSG00000236859
Gene Name: NIFK-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
966-976
0.014
1
7mer
1141-1153
0.013
1
XLOC_009807
hsa-miR-200b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020190
Biotype: transcript isomorph
Gene id: XLOC_009807
Gene Name: XLOC_009807
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1057-1082
0.019
1
6mer
1313-1339
0.005
1
6mer
871-876
0.003
1
LINC01410
hsa-miR-200b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000424345
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
625-650
0.027
0
AP000235.2
hsa-miR-200b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441009
Biotype: lincRNA
Gene id: ENSG00000226983
Gene Name: AP000235.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1020-1037
0.014
1
8mer
1000-1013
0.007
1
6mer
2521-2544
0.006
1
OIP5-AS1
hsa-miR-200b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000501665
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1138-1157
0.020
2
6mer
998-1003
0.004
1
6mer
976-998
0.003
0
HOXB-AS2
hsa-miR-200b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000464382
Biotype: antisense
Gene id: ENSG00000239552
Gene Name: HOXB-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-101
0.027
6
AC063980.3
hsa-miR-200b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514282
Biotype: lincRNA
Gene id: ENSG00000279240
Gene Name: AC063980.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-380
0.027
2
DDR1-AS1
hsa-miR-200b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458361
Biotype: antisense
Gene id: ENSG00000237775
Gene Name: DDR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1270-1296
0.017
0
7mer
2016-2041
0.005
1
7mer
1930-1955
0.004
1
RP11-482H16.1
hsa-miR-200b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607540
Biotype: processed_transcript
Gene id: ENSG00000271894
Gene Name: RP11-482H16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2228-2243
0.018
3
6mer
2198-2204
0.009
7
CXorf24
hsa-miR-200b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000357412
Biotype: lincRNA
Gene id: ENSG00000196741
Gene Name: CXorf24
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1071-1092
0.027
1
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