LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
RP13-516M14.1
hsa-miR-200b-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000566986
Biotype: lincRNA
Gene id: ENSG00000260563
Gene Name: RP13-516M14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
490-508
0.071
1
XLOC_001612
hsa-miR-200b-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002651
Biotype: transcript isomorph
Gene id: XLOC_001612
Gene Name: XLOC_001612
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
452-461
0.057
0
6mer
537-555
0.013
0
KCNQ1OT1
hsa-miR-200b-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
42457-42481
0.007
1
7mer
1153-1172
0.007
1
7mer
88744-88764
0.007
2
8mer
7538-7557
0.006
1
7mer
32263-32283
0.005
0
8mer
34915-34936
0.005
0
7mer
4366-4386
0.005
0
8mer
75279-75304
0.004
0
8mer
31201-31223
0.003
0
7mer
52959-52980
0.003
1
7mer
36985-37007
0.002
0
6mer
5411-5435
0.002
1
6mer
23412-23425
0.002
0
6mer
63903-63913
0.002
1
6mer
89416-89430
0.002
Not Conserved
6mer
50187-50198
0.002
1
6mer
19725-19748
0.002
0
6mer
11075-11101
0.001
0
6mer
35492-35517
0.001
0
XLOC_014002
hsa-miR-200b-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029256
Biotype: transcript isomorph
Gene id: XLOC_014002
Gene Name: XLOC_014002
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-156
0.069
2
XLOC_008046
hsa-miR-200b-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016921
Biotype: transcript isomorph
Gene id: XLOC_008046
Gene Name: XLOC_008046
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
713-719
0.042
8
7mer
3233-3245
0.010
9
6mer
3740-3764
0.005
4
6mer
4174-4201
0.004
4
6mer
4173-4194
0.004
0
6mer
4191-4208
0.004
3
LINC00890
hsa-miR-200b-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000569275
Biotype: lincRNA
Gene id: ENSG00000260802
Gene Name: LINC00890
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
713-719
0.042
8
7mer
3233-3245
0.010
9
6mer
3740-3764
0.005
4
6mer
4174-4201
0.004
4
6mer
4173-4194
0.004
0
6mer
4191-4208
0.004
3
SNHG14
hsa-miR-200b-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000551361
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
520-527
0.067
1
PRKG1-AS1
hsa-miR-200b-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000420193
Biotype: antisense
Gene id: ENSG00000236671
Gene Name: PRKG1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
694-708
0.066
4
RP11-111F5.4
hsa-miR-200b-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000412631
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-40
0.065
0
XLOC_006460
hsa-miR-200b-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013820
Biotype: transcript isomorph
Gene id: XLOC_006460
Gene Name: XLOC_006460
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1027-1049
0.036
0
6mer
496-519
0.016
1
6mer
64-84
0.013
1
XIST
hsa-miR-200b-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6792-6812
0.016
1
7mer
836-852
0.012
1
8mer
5853-5875
0.011
1
6mer
19026-19045
0.005
1
8mer
4574-4580
0.004
1
6mer
16508-16530
0.002
1
6mer
12660-12686
0.002
1
6mer
12372-12398
0.002
1
6mer
6733-6744
0.002
4
6mer
4902-4928
0.002
1
6mer
16916-16932
0.002
Not Conserved
6mer
2113-2129
0.001
Not Conserved
6mer
9563-9573
0.001
0
6mer
4429-4448
0.001
0
MIR6818
hsa-miR-200b-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28030-28053
0.013
2
6mer
48851-48864
0.011
11
7mer
39879-39889
0.006
1
7mer
10092-10115
0.004
2
7mer
10724-10740
0.004
1
7mer
38333-38353
0.003
0
7mer
32781-32803
0.002
0
6mer
18285-18294
0.002
6
6mer
13933-13955
0.002
1
6mer
22750-22772
0.002
1
6mer
3649-3672
0.002
1
6mer
17624-17646
0.002
1
6mer
31352-31364
0.001
2
6mer
9853-9858
0.001
0
6mer
6763-6778
0.001
0
6mer
10012-10038
0.001
4
6mer
30758-30781
0.001
1
6mer
39863-39889
0.001
0
6mer
10657-10671
0.001
0
RBM26-AS1
hsa-miR-200b-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000606584
Biotype: antisense
Gene id: ENSG00000227354
Gene Name: RBM26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
921-931
0.057
1
6mer
1011-1023
0.004
0
RP11-299J3.8
hsa-miR-200b-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608756
Biotype: antisense
Gene id: ENSG00000272758
Gene Name: RP11-299J3.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
778-791
0.052
10
6mer
868-893
0.004
5
6mer
55-69
0.004
1
RP11-78L16.1
hsa-miR-200b-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000616578
Biotype: lincRNA
Gene id: ENSG00000278630
Gene Name: RP11-78L16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
479-500
0.060
1
XLOC_004451
hsa-miR-200b-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009438
Biotype: transcript isomorph
Gene id: XLOC_004451
Gene Name: XLOC_004451
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
943-969
0.025
1
7mer
928-934
0.015
0
8mer
674-691
0.013
0
6mer
208-224
0.007
0
LINC01428
hsa-miR-200b-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449581
Biotype: lincRNA
Gene id: ENSG00000228888
Gene Name: LINC01428
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-66
0.059
5
RP11-554A11.7
hsa-miR-200b-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000567925
Biotype: lincRNA
Gene id: ENSG00000260895
Gene Name: RP11-554A11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
573-593
0.041
0
7mer
573-599
0.018
1
RP11-839D17.3
hsa-miR-200b-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533504
Biotype: antisense
Gene id: ENSG00000255129
Gene Name: RP11-839D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
387-408
0.053
1
6mer
306-325
0.004
2
RP11-1143G9.5
hsa-miR-200b-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613291
Biotype: lincRNA
Gene id: ENSG00000274979
Gene Name: RP11-1143G9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5203-5219
0.023
0
8mer
1440-1459
0.014
0
7mer
1112-1134
0.008
1
7mer
1278-1298
0.007
0
6mer
832-844
0.004
1
6mer
1636-1652
0.002
0
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