LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
RP11-154D6.1
hsa-miR-200b-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000585945
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-116
0.029
4
LINC00837
hsa-miR-200b-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038376.1
Biotype: lincRNA
Gene id: NR_038376.1 (gene)
Gene Name: LINC00837
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-77
0.025
5
6mer
453-467
0.004
0
RP11-361F15.2
hsa-miR-200b-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000443556
Biotype: lincRNA
Gene id: ENSG00000225135
Gene Name: RP11-361F15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1349-1371
0.011
11
7mer
529-553
0.010
3
7mer
595-613
0.009
6
LINC00837
hsa-miR-200b-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038375.1
Biotype: lincRNA
Gene id: NR_038375.1 (gene)
Gene Name: LINC00837
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-77
0.025
5
6mer
453-467
0.004
0
RP11-1070N10.4
hsa-miR-200b-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553785
Biotype: lincRNA
Gene id: ENSG00000258390
Gene Name: RP11-1070N10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1256-1276
0.014
0
6mer
381-400
0.007
1
6mer
550-566
0.005
1
6mer
836-855
0.003
Not Conserved
CTD-2626G11.2
hsa-miR-200b-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593903
Biotype: lincRNA
Gene id: ENSG00000268416
Gene Name: CTD-2626G11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1020-1032
0.011
Not Conserved
9mer
4739-4758
0.005
Not Conserved
8mer
4232-4255
0.003
Not Conserved
6mer
569-579
0.003
Not Conserved
6mer
495-522
0.003
Not Conserved
7mer
1707-1718
0.002
Not Conserved
6mer
2973-2992
0.001
Not Conserved
XLOC_010592
hsa-miR-200b-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021992
Biotype: transcript isomorph
Gene id: XLOC_010592
Gene Name: XLOC_010592
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4059-4078
0.008
0
9mer
2739-2759
0.007
0
9mer
3274-3295
0.006
0
6mer
5303-5324
0.005
0
6mer
4262-4282
0.002
0
6mer
2954-2975
0.001
0
6mer
3596-3616
0.001
0
WT1-AS
hsa-miR-200b-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000395900
Biotype: antisense
Gene id: ENSG00000183242
Gene Name: WT1-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3132-3156
0.025
3
6mer
3058-3073
0.004
8
CTD-2135J3.3
hsa-miR-200b-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000506149
Biotype: antisense
Gene id: ENSG00000248896
Gene Name: CTD-2135J3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
709-735
0.029
0
RP5-842K16.1
hsa-miR-200b-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000461145
Biotype: lincRNA
Gene id: ENSG00000204990
Gene Name: RP5-842K16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-209
0.027
5
6mer
962-984
0.002
Not Conserved
RP11-32D16.1
hsa-miR-200b-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519609
Biotype: lincRNA
Gene id: ENSG00000254135
Gene Name: RP11-32D16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
330-348
0.029
8
RP11-510D19.1
hsa-miR-200b-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_038325.1
Biotype: lincRNA
Gene id: NR_038325.1 (gene)
Gene Name: RP11-510D19.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1807-1827
0.012
1
6mer
17-43
0.007
1
7mer
2171-2185
0.006
1
6mer
2281-2292
0.003
0
6mer
1449-1475
0.002
2
PART1
hsa-miR-200b-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515734
Biotype: lincRNA
Gene id: ENSG00000152931
Gene Name: PART1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-151
0.022
4
6mer
2035-2058
0.005
3
6mer
1595-1622
0.002
2
FAM138C
hsa-miR-200b-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000305248
Biotype: lincRNA
Gene id: ENSG00000218839
Gene Name: FAM138C
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-106
0.029
2
XLOC_003111
hsa-miR-200b-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006505
Biotype: transcript isomorph
Gene id: XLOC_003111
Gene Name: XLOC_003111
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
181-205
0.014
1
7mer
671-689
0.009
1
6mer
1022-1034
0.005
1
XLOC_002498
hsa-miR-200b-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004594
Biotype: transcript isomorph
Gene id: XLOC_002498
Gene Name: XLOC_002498
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3400-3420
0.020
2
6mer
5053-5075
0.002
1
6mer
1917-1940
0.002
2
6mer
2286-2301
0.002
1
6mer
3098-3124
0.002
1
6mer
2508-2532
0.001
1
RP11-714M23.2
hsa-miR-200b-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000620778
Biotype: lincRNA
Gene id: ENSG00000277837
Gene Name: RP11-714M23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-85
0.027
1
6mer
2412-2429
0.002
0
RP11-693J15.5
hsa-miR-200b-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
10587-10612
0.007
1
7mer
7165-7191
0.006
1
7mer
9696-9714
0.005
2
6mer
5126-5153
0.002
1
6mer
6897-6923
0.002
1
6mer
7372-7396
0.002
1
6mer
1185-1205
0.002
0
6mer
4713-4736
0.002
1
6mer
5587-5593
0.002
0
XLOC_013486
hsa-miR-200b-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028127
Biotype: transcript isomorph
Gene id: XLOC_013486
Gene Name: XLOC_013486
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-157
0.029
Not Conserved
SOX2-OT
hsa-miR-200b-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492337
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1798-1822
0.013
4
7mer
361-376
0.008
2
6mer
2134-2153
0.005
3
6mer
1403-1424
0.003
1
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