LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
LINC01010
hsa-miR-200b-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431422
Biotype: lincRNA
Gene id: ENSG00000236700
Gene Name: LINC01010
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1916-1941
0.021
Not Conserved
8mer
764-776
0.009
Not Conserved
CTC-523E23.5
hsa-miR-200b-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601776
Biotype: lincRNA
Gene id: ENSG00000269086
Gene Name: CTC-523E23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5044-5057
0.015
0
7mer
5112-5138
0.015
0
6mer
3302-3319
0.001
0
RP11-268E23.2
hsa-miR-200b-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609508
Biotype: lincRNA
Gene id: ENSG00000273370
Gene Name: RP11-268E23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-165
0.030
0
AC007193.9
hsa-miR-200b-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599645
Biotype: antisense
Gene id: ENSG00000268810
Gene Name: AC007193.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-77
0.030
0
CTD-2521M24.9
hsa-miR-200b-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000500836
Biotype: lincRNA
Gene id: ENSG00000269640
Gene Name: CTD-2521M24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
617-643
0.019
1
7mer
948-961
0.012
1
XLOC_013778
hsa-miR-200b-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028426
Biotype: transcript isomorph
Gene id: XLOC_013778
Gene Name: XLOC_013778
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6480-6493
0.030
1
AC003009.1
hsa-miR-200b-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571611
Biotype: antisense
Gene id: ENSG00000262011
Gene Name: AC003009.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
466-489
0.022
3
6mer
138-151
0.009
6
RP11-681H18.2
hsa-miR-200b-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000612252
Biotype: lincRNA
Gene id: ENSG00000277801
Gene Name: RP11-681H18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
9-29
0.030
1
XLOC_006112
hsa-miR-200b-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013455
Biotype: transcript isomorph
Gene id: XLOC_006112
Gene Name: XLOC_006112
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
349-372
0.023
1
6mer
441-457
0.007
1
LINC01347
hsa-miR-200b-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411733
Biotype: retained_intron
Gene id: ENSG00000214837
Gene Name: LINC01347
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
438-457
0.030
0
RP11-181B18.1
hsa-miR-200b-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425754
Biotype: antisense
Gene id: ENSG00000237919
Gene Name: RP11-181B18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
160-177
0.025
8
6mer
125-142
0.005
1
MAGI2-AS3
hsa-miR-200b-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452320
Biotype: retained_intron
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
393-410
0.019
2
7mer
6163-6186
0.004
1
6mer
825-845
0.003
1
6mer
2177-2202
0.003
2
6mer
7058-7069
0.001
0
RP11-389C8.2
hsa-miR-200b-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000564956
Biotype: sense_overlapping
Gene id: ENSG00000261269
Gene Name: RP11-389C8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1520-1538
0.023
0
6mer
2341-2365
0.004
1
6mer
789-810
0.003
1
MME-AS1
hsa-miR-200b-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000484721
Biotype: antisense
Gene id: ENSG00000240666
Gene Name: MME-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-104
0.025
3
6mer
73-90
0.005
0
MYLK-AS2
hsa-miR-200b-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000515464
Biotype: antisense
Gene id: ENSG00000250174
Gene Name: MYLK-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-217
0.030
2
XLOC_007279
hsa-miR-200b-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015917
Biotype: transcript isomorph
Gene id: XLOC_007279
Gene Name: XLOC_007279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4773-4799
0.013
0
6mer
76-87
0.007
1
6mer
323-345
0.006
4
6mer
3291-3315
0.002
1
6mer
2837-2851
0.002
1
6mer
2246-2265
0.001
0
RP11-154D6.1
hsa-miR-200b-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000589255
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-59
0.030
4
RP11-542G1.1
hsa-miR-200b-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505930
Biotype: lincRNA
Gene id: ENSG00000251185
Gene Name: RP11-542G1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-85
0.030
3
LINC00535
hsa-miR-200b-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520096
Biotype: antisense
Gene id: ENSG00000246662
Gene Name: LINC00535
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
641-661
0.030
1
LINC01355
hsa-miR-200b-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566551
Biotype: lincRNA
Gene id: ENSG00000261326
Gene Name: LINC01355
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3933-3958
0.007
2
7mer
2359-2381
0.006
1
7mer
1448-1454
0.006
2
7mer
4131-4144
0.005
1
6mer
4726-4743
0.004
1
6mer
2143-2156
0.002
1
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