LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
DLEU1
hsa-miR-200b-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_109973.1
Biotype: sense
Gene id: NR_109973.1 (gene)
Gene Name: DLEU1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
644-662
0.015
1
6mer
2660-2685
0.006
1
7mer
2020-2040
0.006
1
6mer
522-548
0.005
1
LINC00643
hsa-miR-200b-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555518
Biotype: lincRNA
Gene id: ENSG00000186369
Gene Name: LINC00643
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
405-432
0.032
5
AC096670.3
hsa-miR-200b-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000376593
Biotype: antisense
Gene id: ENSG00000204581
Gene Name: AC096670.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1894-1909
0.018
7
7mer
2121-2138
0.014
2
XLOC_013574
hsa-miR-200b-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028230
Biotype: transcript isomorph
Gene id: XLOC_013574
Gene Name: XLOC_013574
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-140
0.032
5
RP11-477N3.1
hsa-miR-200b-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606436
Biotype: lincRNA
Gene id: ENSG00000272156
Gene Name: RP11-477N3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
376-382
0.032
1
FAM138A
hsa-miR-200b-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000461467
Biotype: lincRNA
Gene id: ENSG00000237613
Gene Name: FAM138A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-43
0.031
2
RP11-265E18.1
hsa-miR-200b-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608314
Biotype: lincRNA
Gene id: ENSG00000272905
Gene Name: RP11-265E18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-350
0.022
6
6mer
580-596
0.009
3
MIR133A1HG
hsa-miR-200b-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581072
Biotype: antisense
Gene id: ENSG00000265142
Gene Name: MIR133A1HG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1489-1502
0.007
Not Conserved
7mer
3193-3213
0.007
3
7mer
1124-1141
0.006
2
7mer
2435-2454
0.006
2
6mer
1785-1799
0.003
4
6mer
2748-2764
0.002
1
RP11-71H17.7
hsa-miR-200b-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000568966
Biotype: sense_overlapping
Gene id: ENSG00000260391
Gene Name: RP11-71H17.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2182-2197
0.025
9
7mer
1369-1384
0.006
3
RP11-367B6.2
hsa-miR-200b-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000445111
Biotype: sense_intronic
Gene id: ENSG00000228280
Gene Name: RP11-367B6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-170
0.031
7
LINC01091
hsa-miR-200b-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515769
Biotype: lincRNA
Gene id: ENSG00000249464
Gene Name: LINC01091
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
554-568
0.022
0
6mer
2001-2014
0.006
2
6mer
1379-1404
0.002
1
MGC2889
hsa-miR-200b-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_026877.1
Biotype: sense
Gene id: NR_026877.1 (gene)
Gene Name: MGC2889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
692-716
0.027
1
6mer
1766-1787
0.004
0
LINC00370
hsa-miR-200b-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000455487
Biotype: lincRNA
Gene id: ENSG00000223617
Gene Name: LINC00370
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
350-371
0.031
0
RP11-120K9.2
hsa-miR-200b-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558237
Biotype: antisense
Gene id: ENSG00000259684
Gene Name: RP11-120K9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
250-267
0.031
0
RP11-379H18.1
hsa-miR-200b-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000605778
Biotype: antisense
Gene id: ENSG00000271122
Gene Name: RP11-379H18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
652-678
0.031
1
KIZ-AS1
hsa-miR-200b-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000443753
Biotype: antisense
Gene id: ENSG00000232712
Gene Name: KIZ-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
442-461
0.016
0
7mer
297-312
0.015
1
RP11-321E8.4
hsa-miR-200b-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000442436
Biotype: lincRNA
Gene id: ENSG00000229881
Gene Name: RP11-321E8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
419-444
0.031
1
RP11-502M1.2
hsa-miR-200b-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512652
Biotype: lincRNA
Gene id: ENSG00000249425
Gene Name: RP11-502M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
215-234
0.020
1
6mer
1125-1135
0.004
0
6mer
968-993
0.004
0
6mer
799-819
0.002
1
LINC00347
hsa-miR-200b-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000600832
Biotype: lincRNA
Gene id: ENSG00000236678
Gene Name: LINC00347
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
623-645
0.024
8
6mer
442-464
0.006
6
CTA-941F9.10
hsa-miR-200b-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10322-10347
0.005
2
7mer
11476-11492
0.005
0
6mer
22225-22246
0.004
0
6mer
20108-20126
0.003
3
7mer
18862-18882
0.003
0
6mer
1337-1357
0.002
0
6mer
20519-20542
0.002
0
6mer
8790-8805
0.002
1
6mer
8215-8234
0.002
1
6mer
2563-2576
0.002
0
6mer
18770-18793
0.001
1
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