LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-200b-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-560G2.1
hsa-miR-200b-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548779
Biotype: antisense
Gene id: ENSG00000254451
Gene Name: RP11-560G2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
807-832
0.023
1
6mer
621-626
0.005
1
6mer
1063-1089
0.005
1
DLEU1
hsa-miR-200b-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_002605.2
Biotype: sense
Gene id: NR_002605.2 (gene)
Gene Name: DLEU1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
591-609
0.015
1
7mer
1967-1987
0.006
1
6mer
2607-2632
0.006
1
6mer
469-495
0.004
1
RP11-383G6.3
hsa-miR-200b-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460977
Biotype: sense_overlapping
Gene id: ENSG00000244327
Gene Name: RP11-383G6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
381-388
0.032
1
RASAL2-AS1
hsa-miR-200b-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421505
Biotype: lincRNA
Gene id: ENSG00000224687
Gene Name: RASAL2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1674-1700
0.024
3
6mer
119-145
0.005
1
6mer
1163-1184
0.003
2
RP11-471M2.3
hsa-miR-200b-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000606221
Biotype: lincRNA
Gene id: ENSG00000272046
Gene Name: RP11-471M2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-44
0.021
1
6mer
365-389
0.006
0
6mer
1076-1098
0.003
1
6mer
1445-1470
0.002
1
CASC7
hsa-miR-200b-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7161-7181
0.027
8
6mer
3122-3142
0.002
2
6mer
1887-1912
0.002
1
6mer
7505-7529
0.001
0
XLOC_012370
hsa-miR-200b-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025543
Biotype: transcript isomorph
Gene id: XLOC_012370
Gene Name: XLOC_012370
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1182-1204
0.021
0
6mer
1307-1325
0.011
0
KRT73-AS1
hsa-miR-200b-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552364
Biotype: antisense
Gene id: ENSG00000257495
Gene Name: KRT73-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-30
0.032
0
RP11-362K2.2
hsa-miR-200b-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548969
Biotype: lincRNA
Gene id: ENSG00000258231
Gene Name: RP11-362K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
671-692
0.032
1
XLOC_003038
hsa-miR-200b-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006435
Biotype: transcript isomorph
Gene id: XLOC_003038
Gene Name: XLOC_003038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-138
0.032
0
HIF1A-AS2
hsa-miR-200b-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_045406.1
Biotype: antisense
Gene id: NR_045406.1 (gene)
Gene Name: HIF1A-AS2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-165
0.032
7
RP11-232C2.3
hsa-miR-200b-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555954
Biotype: antisense
Gene id: ENSG00000258719
Gene Name: RP11-232C2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
266-288
0.028
4
6mer
558-580
0.004
1
RP11-1017G21.6
hsa-miR-200b-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000607122
Biotype: lincRNA
Gene id: ENSG00000272444
Gene Name: RP11-1017G21.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
204-230
0.032
0
RP11-775H9.3
hsa-miR-200b-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000569694
Biotype: lincRNA
Gene id: ENSG00000261166
Gene Name: RP11-775H9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1000-1006
0.025
0
6mer
301-313
0.006
0
RP11-1094M14.11
hsa-miR-200b-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592381
Biotype: lincRNA
Gene id: ENSG00000267321
Gene Name: RP11-1094M14.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
225-249
0.017
1
6mer
463-479
0.008
4
6mer
1015-1038
0.007
3
RP3-465N24.6
hsa-miR-200b-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607698
Biotype: lincRNA
Gene id: ENSG00000272432
Gene Name: RP3-465N24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
232-258
0.032
1
CTD-2541J13.2
hsa-miR-200b-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583493
Biotype: antisense
Gene id: ENSG00000263424
Gene Name: CTD-2541J13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-336
0.014
6
8mer
1725-1740
0.011
1
7mer
1431-1453
0.007
4
FLJ46284
hsa-miR-200b-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000623616
Biotype: TEC
Gene id: ENSG00000248858
Gene Name: FLJ46284
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3797-3811
0.014
1
7mer
745-761
0.011
0
6mer
4045-4066
0.004
Not Conserved
6mer
627-640
0.002
0
RP11-383H13.1
hsa-miR-200b-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000457356
Biotype: antisense
Gene id: ENSG00000235531
Gene Name: RP11-383H13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-382
0.018
1
7mer
3176-3186
0.007
1
6mer
3978-3989
0.004
0
6mer
2910-2936
0.002
0
XLOC_002720
hsa-miR-200b-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006111
Biotype: transcript isomorph
Gene id: XLOC_002720
Gene Name: XLOC_002720
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-272
0.017
0
7mer
707-730
0.014
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept