LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
LINC00643
hsa-miR-200b-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000334389
Biotype: lincRNA
Gene id: ENSG00000186369
Gene Name: LINC00643
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
183-210
0.029
5
6mer
2252-2279
0.003
1
6mer
2298-2324
0.001
0
XLOC_004267
hsa-miR-200b-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009232
Biotype: transcript isomorph
Gene id: XLOC_004267
Gene Name: XLOC_004267
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
108-122
0.027
0
6mer
844-858
0.006
0
XLOC_005582
hsa-miR-200b-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011431
Biotype: transcript isomorph
Gene id: XLOC_005582
Gene Name: XLOC_005582
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-113
0.033
1
XLOC_004053
hsa-miR-200b-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008556
Biotype: transcript isomorph
Gene id: XLOC_004053
Gene Name: XLOC_004053
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-333
0.017
1
6mer
3079-3102
0.006
1
6mer
160-182
0.004
0
6mer
566-582
0.003
0
6mer
2147-2170
0.002
Not Conserved
RP11-97E7.2
hsa-miR-200b-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508977
Biotype: lincRNA
Gene id: ENSG00000249297
Gene Name: RP11-97E7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-77
0.033
0
XLOC_009517
hsa-miR-200b-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019720
Biotype: transcript isomorph
Gene id: XLOC_009517
Gene Name: XLOC_009517
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
975-995
0.033
0
XLOC_006964
hsa-miR-200b-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014550
Biotype: transcript isomorph
Gene id: XLOC_006964
Gene Name: XLOC_006964
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-154
0.019
1
7mer
817-843
0.008
0
7mer
294-313
0.005
Not Conserved
RP11-111F5.4
hsa-miR-200b-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000377518
Biotype: retained_intron
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1227-1240
0.023
0
6mer
1641-1648
0.010
0
XLOC_001668
hsa-miR-200b-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2927-2945
0.020
0
6mer
4880-4895
0.009
1
6mer
3990-4007
0.002
0
6mer
1089-1104
0.002
Not Conserved
CLRN1-AS1
hsa-miR-200b-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465576
Biotype: antisense
Gene id: ENSG00000239265
Gene Name: CLRN1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
659-665
0.033
3
RP11-545I5.3
hsa-miR-200b-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038246.1
Biotype: antisense
Gene id: NR_038246.1 (gene)
Gene Name: RP11-545I5.3
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
196-218
0.013
1
7mer
1093-1111
0.009
1
7mer
1650-1668
0.005
2
6mer
3076-3102
0.003
2
6mer
2501-2510
0.003
1
CTA-292E10.9
hsa-miR-200b-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
7318-7337
0.007
1
7mer
3747-3771
0.006
7
8mer
5979-5997
0.006
5
7mer
10782-10805
0.003
0
6mer
10514-10528
0.002
1
6mer
9179-9203
0.002
2
6mer
4946-4955
0.002
1
6mer
2817-2830
0.002
3
6mer
5161-5183
0.002
0
6mer
2534-2545
0.002
2
RP11-977G19.11
hsa-miR-200b-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549565
Biotype: antisense
Gene id: ENSG00000257303
Gene Name: RP11-977G19.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
258-275
0.033
6
NCOA7-AS1
hsa-miR-200b-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429007
Biotype: antisense
Gene id: ENSG00000232131
Gene Name: NCOA7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-152
0.033
1
DYX1C1-CCPG1
hsa-miR-200b-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568310
Biotype: processed_transcript
Gene id: ENSG00000261771
Gene Name: DYX1C1-CCPG1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
568-589
0.024
3
7mer
596-613
0.006
2
6mer
543-564
0.003
4
RP11-216M21.7
hsa-miR-200b-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2620-2635
0.026
0
7mer
2102-2120
0.006
Not Conserved
RP11-307O13.1
hsa-miR-200b-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000568811
Biotype: lincRNA
Gene id: ENSG00000261728
Gene Name: RP11-307O13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
903-926
0.014
1
7mer
748-771
0.011
3
6mer
1695-1714
0.006
3
6mer
678-699
0.003
1
RP11-154D6.1
hsa-miR-200b-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000586974
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-35
0.033
4
RP11-2A4.4
hsa-miR-200b-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566529
Biotype: lincRNA
Gene id: ENSG00000261146
Gene Name: RP11-2A4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2810-2833
0.012
2
8mer
3609-3622
0.009
1
7mer
753-776
0.009
2
6mer
3727-3740
0.002
1
RP11-211N8.2
hsa-miR-200b-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000420615
Biotype: lincRNA
Gene id: ENSG00000226007
Gene Name: RP11-211N8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
218-231
0.032
0
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