LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
XLOC_000246
hsa-miR-200b-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000044
Biotype: transcript isomorph
Gene id: XLOC_000246
Gene Name: XLOC_000246
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1892-1912
0.036
1
RP11-111F5.4
hsa-miR-200b-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000429818
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
893-906
0.036
0
RP11-139J15.2
hsa-miR-200b-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449529
Biotype: lincRNA
Gene id: ENSG00000152487
Gene Name: RP11-139J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
394-404
0.020
1
7mer
458-479
0.016
1
RP11-529E10.6
hsa-miR-200b-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000564650
Biotype: sense_overlapping
Gene id: ENSG00000261643
Gene Name: RP11-529E10.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-256
0.036
0
RP11-510D19.1
hsa-miR-200b-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000566582
Biotype: lincRNA
Gene id: ENSG00000260676
Gene Name: RP11-510D19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1522-1542
0.021
1
7mer
1886-1900
0.009
1
6mer
1996-2007
0.003
0
6mer
1164-1190
0.003
2
AC093590.1
hsa-miR-200b-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439734
Biotype: lincRNA
Gene id: ENSG00000238217
Gene Name: AC093590.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2236-2248
0.015
0
8mer
1353-1365
0.011
1
7mer
1189-1210
0.010
5
LINC00581
hsa-miR-200b-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_103790.1
Biotype: lincRNA
Gene id: NR_103790.1 (gene)
Gene Name: LINC00581
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-72
0.016
0
7mer
191-208
0.013
0
6mer
63-83
0.007
0
CTD-2013N24.2
hsa-miR-200b-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599467
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
200-224
0.036
1
AL132709.8
hsa-miR-200b-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000442197
Biotype: lincRNA
Gene id: ENSG00000232018
Gene Name: AL132709.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
558-578
0.018
1
7mer
429-450
0.010
1
6mer
369-379
0.004
1
6mer
191-211
0.003
0
RP4-714D9.5
hsa-miR-200b-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564623
Biotype: sense_overlapping
Gene id: ENSG00000261254
Gene Name: RP4-714D9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4924-4941
0.020
1
6mer
22-46
0.008
2
6mer
4574-4599
0.003
0
6mer
2862-2875
0.003
1
6mer
3349-3356
0.002
1
DNM3OS
hsa-miR-200b-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103486.1
Biotype: antisense
Gene id: NR_103486.1 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2400-2419
0.017
5
7mer
852-877
0.007
3
6mer
3537-3556
0.005
3
7mer
1769-1794
0.004
1
6mer
1422-1437
0.002
0
FAM138E
hsa-miR-200b-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559252
Biotype: lincRNA
Gene id: ENSG00000248893
Gene Name: FAM138E
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
548-567
0.035
2
EPB41L4A-AS1
hsa-miR-200b-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000413221
Biotype: lincRNA
Gene id: ENSG00000224032
Gene Name: EPB41L4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2911-2928
0.025
2
7mer
1085-1090
0.006
0
6mer
2671-2686
0.004
1
XLOC_005067
hsa-miR-200b-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010539
Biotype: transcript isomorph
Gene id: XLOC_005067
Gene Name: XLOC_005067
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
971-988
0.023
0
7mer
479-484
0.009
0
6mer
936-953
0.003
0
RP11-568J23.5
hsa-miR-200b-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000602706
Biotype: antisense
Gene id: ENSG00000270184
Gene Name: RP11-568J23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
103-121
0.035
0
XLOC_009474
hsa-miR-200b-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4019-4036
0.013
5
7mer
6718-6734
0.008
Not Conserved
6mer
201-212
0.005
1
7mer
5049-5072
0.004
0
6mer
442-462
0.003
1
6mer
3506-3527
0.002
0
CTD-3185P2.1
hsa-miR-200b-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565387
Biotype: antisense
Gene id: ENSG00000261351
Gene Name: CTD-3185P2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1486-1503
0.027
2
8mer
1397-1409
0.008
2
RP11-434I12.2
hsa-miR-200b-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514599
Biotype: antisense
Gene id: ENSG00000250295
Gene Name: RP11-434I12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2528-2553
0.012
1
7mer
1112-1131
0.009
2
6mer
81-93
0.006
1
6mer
178-200
0.005
4
6mer
1517-1536
0.002
2
AL157902.3
hsa-miR-200b-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425010
Biotype: antisense
Gene id: ENSG00000236866
Gene Name: AL157902.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
514-534
0.019
1
7mer
37-52
0.010
2
6mer
334-348
0.006
2
RP5-965G21.4
hsa-miR-200b-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000618303
Biotype: lincRNA
Gene id: ENSG00000274414
Gene Name: RP5-965G21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2247-2261
0.035
0
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