LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
DNM3OS
hsa-miR-200b-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417354
Biotype: antisense
Gene id: ENSG00000230630
Gene Name: DNM3OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2748-2767
0.021
5
7mer
1200-1225
0.006
3
6mer
3885-3904
0.006
3
7mer
2117-2142
0.004
1
6mer
1770-1785
0.002
0
XLOC_008031
hsa-miR-200b-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017436
Biotype: transcript isomorph
Gene id: XLOC_008031
Gene Name: XLOC_008031
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-28
0.038
0
XLOC_011693
hsa-miR-200b-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024250
Biotype: transcript isomorph
Gene id: XLOC_011693
Gene Name: XLOC_011693
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1136-1155
0.038
0
AC083843.1
hsa-miR-200b-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000568248
Biotype: lincRNA
Gene id: ENSG00000259820
Gene Name: AC083843.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5493-5518
0.015
4
7mer
5113-5132
0.006
0
7mer
1845-1862
0.005
2
6mer
791-815
0.004
1
7mer
4949-4971
0.004
0
6mer
2620-2638
0.002
0
6mer
2605-2623
0.001
1
6mer
4942-4963
0.001
1
CTD-2521M24.9
hsa-miR-200b-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601885
Biotype: lincRNA
Gene id: ENSG00000269640
Gene Name: CTD-2521M24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
636-662
0.023
1
7mer
967-980
0.015
1
C5orf64
hsa-miR-200b-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505642
Biotype: lincRNA
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
290-309
0.020
5
8mer
2055-2072
0.010
1
6mer
2720-2745
0.004
1
6mer
1769-1783
0.003
3
RP11-139J15.2
hsa-miR-200b-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444660
Biotype: lincRNA
Gene id: ENSG00000152487
Gene Name: RP11-139J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
257-267
0.021
1
7mer
321-342
0.016
1
RP11-541F9.2
hsa-miR-200b-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430776
Biotype: lincRNA
Gene id: ENSG00000228215
Gene Name: RP11-541F9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
827-847
0.029
0
7mer
830-854
0.009
1
CTD-2636A23.2
hsa-miR-200b-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000565748
Biotype: antisense
Gene id: ENSG00000261604
Gene Name: CTD-2636A23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1973-1991
0.020
6
8mer
1185-1202
0.012
0
7mer
1852-1876
0.006
2
MALAT1
hsa-miR-200b-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000508832
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1116-1128
0.026
5
6mer
323-333
0.005
1
6mer
518-541
0.004
2
8mer+mismatch
572-592
0.003
2
RP6-24A23.7
hsa-miR-200b-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000564206
Biotype: sense_overlapping
Gene id: ENSG00000261409
Gene Name: RP6-24A23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
404-427
0.017
9
6mer
4861-4877
0.006
2
6mer
4084-4106
0.003
Not Conserved
7mer
2070-2087
0.003
1
6mer
506-528
0.003
0
6mer
1801-1813
0.002
1
7mer
1995-2019
0.002
1
RP11-139J15.2
hsa-miR-200b-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000607346
Biotype: lincRNA
Gene id: ENSG00000152487
Gene Name: RP11-139J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
268-278
0.021
1
7mer
332-353
0.016
1
RP11-80F22.15
hsa-miR-200b-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_034018.1
Biotype: lincRNA
Gene id: NR_034018.1 (gene)
Gene Name: RP11-80F22.15
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-211
0.037
0
RP11-408H1.3
hsa-miR-200b-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000418839
Biotype: lincRNA
Gene id: ENSG00000223387
Gene Name: RP11-408H1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-168
0.027
0
7mer
76-97
0.011
0
ZNRD1-AS1
hsa-miR-200b-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5874-5890
0.011
1
6mer
9599-9619
0.010
1
7mer
2999-3018
0.006
0
6mer
9021-9035
0.006
1
6mer
4831-4858
0.003
0
6mer
6877-6904
0.002
0
CTD-2521M24.9
hsa-miR-200b-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000534306
Biotype: lincRNA
Gene id: ENSG00000269640
Gene Name: CTD-2521M24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
890-916
0.019
1
7mer
1221-1234
0.018
1
LINC00641
hsa-miR-200b-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555379
Biotype: retained_intron
Gene id: ENSG00000258441
Gene Name: LINC00641
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-304
0.022
1
6mer
119-140
0.006
0
7mer
3698-3720
0.005
0
6mer
4815-4840
0.002
1
6mer
1133-1149
0.002
1
XLOC_001200
hsa-miR-200b-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001819
Biotype: transcript isomorph
Gene id: XLOC_001200
Gene Name: XLOC_001200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
916-935
0.008
0
6mer
9452-9469
0.005
1
6mer
9376-9399
0.004
0
6mer
317-341
0.004
1
7mer
5081-5093
0.004
1
6mer
2608-2625
0.002
1
6mer
4870-4885
0.002
0
6mer
4422-4438
0.002
1
6mer
7769-7796
0.002
1
6mer
7170-7193
0.002
0
6mer
6908-6918
0.001
0
RP11-731J8.2
hsa-miR-200b-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000562284
Biotype: sense_overlapping
Gene id: ENSG00000260918
Gene Name: RP11-731J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
112-128
0.013
2
7mer
6178-6203
0.009
0
6mer
6831-6851
0.005
2
6mer
5557-5572
0.004
5
6mer
5362-5381
0.002
3
6mer
2130-2148
0.002
1
6mer
3607-3621
0.002
1
AC004053.1
hsa-miR-200b-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500179
Biotype: antisense
Gene id: ENSG00000245384
Gene Name: AC004053.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
612-636
0.014
0
7mer
1600-1621
0.008
3
7mer
1257-1279
0.005
0
6mer
309-325
0.005
1
6mer
889-909
0.003
1
6mer
1399-1420
0.001
1
6mer
1329-1345
0.001
0
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