LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200a-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-21L23.2
hsa-miR-200a-3p
0.673
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000566747
Biotype: sense_overlapping
Gene id: ENSG00000261578
Gene Name: RP11-21L23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:76801809-76801837
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-253I19.3
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000544086
Biotype: lincRNA
Gene id: ENSG00000255670
Gene Name: RP11-253I19.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:12485400-12485428
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-265E18.1
hsa-miR-200a-3p
0.719
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000608314
Biotype: lincRNA
Gene id: ENSG00000272905
Gene Name: RP11-265E18.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
7:32845889-32845917
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-342K6.1
hsa-miR-200a-3p
0.426
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000604845
Biotype: antisense
Gene id: ENSG00000270696
Gene Name: RP11-342K6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:75661509-75661537
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-36C20.1
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000467270
Biotype: processed_pseudogene
Gene id: ENSG00000240376
Gene Name: RP11-36C20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
5:33162366-33162394
exon
HITS-CLIP
DIRECT
LncBasev2
5:33162366-33162394
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:33162366-33162394
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-492M23.2
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000480465
Biotype: processed_pseudogene
Gene id: ENSG00000229605
Gene Name: RP11-492M23.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:28899283-28899311
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-510C10.4
hsa-miR-200a-3p
0.417
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000565735
Biotype: lincRNA
Gene id: ENSG00000261213
Gene Name: RP11-510C10.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
LCLBAC
IP
Tested Cell Line: LCLBAC
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:75123759-75123787
exon
PAR-CLIP
DIRECT
LncBasev2
RP1-152L7.8
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000603072
Biotype: processed_pseudogene
Gene id: ENSG00000271227
Gene Name: RP1-152L7.8
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MDAMB231
IP
Tested Cell Line: MDAMB231
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:52688666-52688694
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-531A24.3
hsa-miR-200a-3p
0.559
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000564832
Biotype: lincRNA
Gene id: ENSG00000260838
Gene Name: RP11-531A24.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:72949789-72949817
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-54O7.14
hsa-miR-200a-3p
0.428
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000418300
Biotype: sense_intronic
Gene id: ENSG00000242590
Gene Name: RP11-54O7.14
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:1056030-1056058
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-552M11.4
hsa-miR-200a-3p
0.466
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000445680
Biotype: sense_overlapping
Gene id: ENSG00000243960
Gene Name: RP11-552M11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:111441238-111441266
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-75A9.3
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000424779
Biotype: processed_pseudogene
Gene id: ENSG00000224072
Gene Name: RP11-75A9.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
X:46454347-46454375
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-228H13.1
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000600955
Biotype: processed_pseudogene
Gene id: ENSG00000227311
Gene Name: RP1-228H13.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:40333389-40333417
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-239B22.5
hsa-miR-200a-3p
0.985
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000568280
Biotype: antisense
Gene id: ENSG00000260196
Gene Name: RP1-239B22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
11:17380826-17380869
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-814D15.2
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000429552
Biotype: processed_pseudogene
Gene id: ENSG00000225224
Gene Name: RP4-814D15.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:157192727-157192755
exon
HITS-CLIP
DIRECT
LncBasev2
RPL21P120
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000482905
Biotype: processed_pseudogene
Gene id: ENSG00000244582
Gene Name: RPL21P120
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
17:21504699-21504727
exon
HITS-CLIP
DIRECT
LncBasev2
RPL21P129
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: ENST00000491732
Biotype: processed_pseudogene
Gene id: ENSG00000242636
Gene Name: RPL21P129
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:7750857-7750885
exon
HITS-CLIP
DIRECT
LncBasev2
RPL21P3
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000395517
Biotype: processed_pseudogene
Gene id: ENSG00000225419
Gene Name: RPL21P3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:18485438-18485466
exon
HITS-CLIP
DIRECT
LncBasev2
RPL23AP64
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000469465
Biotype: processed_pseudogene
Gene id: ENSG00000240970
Gene Name: RPL23AP64
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:119003367-119003395
exon
HITS-CLIP
DIRECT
LncBasev2
RPL23AP78
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: ENST00000599928
Biotype: processed_pseudogene
Gene id: ENSG00000269244
Gene Name: RPL23AP78
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:8729118-8729146
exon
HITS-CLIP
DIRECT
LncBasev2
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