LncBase Experimental v.2
Help
Download
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-200a-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
HOXA10-HOXA9
hsa-miR-200a-3p
0.428
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: NR_037940.1
Biotype: sense
Gene id: NR_037940.1 (gene)
Gene Name: HOXA10-HOXA9
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
7:27163320-27163348
exon
HITS-CLIP
DIRECT
LncBasev2
HSPD1P1
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000503199
Biotype: processed_pseudogene
Gene id: ENSG00000213430
Gene Name: HSPD1P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:21883537-21883565
exon
HITS-CLIP
DIRECT
LncBasev2
KCNQ1OT1
hsa-miR-200a-3p
0.983
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:2676502-2676530
exon
HITS-CLIP
DIRECT
LncBasev2
LINC00670
hsa-miR-200a-3p
0.534
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000313495
Biotype: lincRNA
Gene id: ENSG00000179136
Gene Name: LINC00670
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
17:12636673-12636701
exon
HITS-CLIP
DIRECT
LncBasev2
LINC01091
hsa-miR-200a-3p
0.548
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000514823
Biotype: lincRNA
Gene id: ENSG00000249464
Gene Name: LINC01091
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:123661887-123661915
exon
HITS-CLIP
DIRECT
LncBasev2
LOC100129034
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: NR_027406.1
Biotype: antisense
Gene id: NR_027406.1 (gene)
Gene Name: LOC100129034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:124358993-124359021
exon
HITS-CLIP
DIRECT
LncBasev2
MALAT1
hsa-miR-200a-3p
0.467
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
11:65500440-65500468
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503645-65503691
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504495-65504523
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503663-65503691
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500440-65500468
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503645-65503691
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504495-65504523
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504495-65504523
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500440-65500468
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504495-65504523
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503645-65503691
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500440-65500468
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504495-65504523
exon
HITS-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
11:65503645-65503691
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
MDAMB231
IP
Tested Cell Line: MDAMB231
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65503645-65503691
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504495-65504523
exon
HITS-CLIP
DIRECT
LncBasev2
MEG3
hsa-miR-200a-3p
0.432
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000522771
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:100829267-100829295
exon
HITS-CLIP
DIRECT
LncBasev2
MEG3
hsa-miR-200a-3p
0.404
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: NR_046467.1
Biotype: lincRNA
Gene id: NR_046467.1 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:100829267-100829295
exon
HITS-CLIP
DIRECT
LncBasev2
MIR3916
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000421406
Biotype: transcribed_unprocessed_pseudogene
Gene id: ENSG00000227671
Gene Name: MIR3916
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:247190264-247190292
exon
HITS-CLIP
DIRECT
LncBasev2
MIR4435-1HG
hsa-miR-200a-3p
0.402
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000371162
Biotype: lincRNA
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
2:111238711-111238739
exon
HITS-CLIP
DIRECT
LncBasev2
MSL3P1
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000438684
Biotype: processed_transcript
Gene id: ENSG00000224287
Gene Name: MSL3P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:233865923-233865951
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-200a-3p
0.711
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65441085-65441113
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430929-65430957
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423939-65423967
exon
HITS-CLIP
DIRECT
LncBasev2
11:65441405-65441433
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427174-65427202
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425237-65425265
exon
HITS-CLIP
DIRECT
LncBasev2
11:65439726-65439754
exon
HITS-CLIP
DIRECT
LncBasev2
11:65429284-65429312
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434635-65434663
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425395-65425423
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434306-65434334
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425101-65425129
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
11:65425237-65425265
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425395-65425423
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425395-65425423
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425237-65425265
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427174-65427202
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434306-65434334
exon
HITS-CLIP
DIRECT
LncBasev2
11:65441085-65441113
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425237-65425265
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425395-65425423
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423939-65423967
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427174-65427202
exon
HITS-CLIP
DIRECT
LncBasev2
11:65441774-65441802
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425237-65425265
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427174-65427202
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425395-65425423
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425237-65425265
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65439726-65439754
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425237-65425265
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434635-65434663
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-200a-3p
0.437
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_028272.1
Biotype: lincRNA
Gene id: NR_028272.1 (gene)
Gene Name: NEAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
11:65425395-65425423
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425237-65425265
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425237-65425265
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425395-65425423
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425395-65425423
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425237-65425265
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425395-65425423
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425237-65425265
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425237-65425265
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423939-65423967
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
MDAMB231
IP
Tested Cell Line: MDAMB231
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65423939-65423967
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425101-65425129
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425395-65425423
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425237-65425265
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65425237-65425265
exon
HITS-CLIP
DIRECT
LncBasev2
RANP1
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000455094
Biotype: processed_pseudogene
Gene id: ENSG00000236603
Gene Name: RANP1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:30486067-30486095
exon
HITS-CLIP
DIRECT
LncBasev2
RNF216P1
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000471244
Biotype: processed_transcript
Gene id: ENSG00000196204
Gene Name: RNF216P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:4998106-4998134
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-139J15.2
hsa-miR-200a-3p
0.439
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000449529
Biotype: lincRNA
Gene id: ENSG00000152487
Gene Name: RP11-139J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
10:18655093-18655121
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-13N13.2
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000577906
Biotype: lincRNA
Gene id: ENSG00000263350
Gene Name: RP11-13N13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:21630120-21630148
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-151F5.2
hsa-miR-200a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000418441
Biotype: processed_pseudogene
Gene id: ENSG00000228053
Gene Name: RP11-151F5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:110025157-110025185
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-159G9.5
hsa-miR-200a-3p
0.546
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000473136
Biotype: lincRNA
Gene id: ENSG00000229729
Gene Name: RP11-159G9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-200a-3p
Sequence: uaacacugucugguaacgaugu
MirBase ID: MIMAT0000682
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
3:88126201-88126229
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept