LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
XLOC_010979
hsa-miR-19b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022688
Biotype: transcript isomorph
Gene id: XLOC_010979
Gene Name: XLOC_010979
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
271-285
0.018
0
7mer
527-532
0.007
2
XLOC_009724
hsa-miR-19b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021112
Biotype: transcript isomorph
Gene id: XLOC_009724
Gene Name: XLOC_009724
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
150-176
0.025
1
RP11-96D1.11
hsa-miR-19b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571197
Biotype: antisense
Gene id: ENSG00000262160
Gene Name: RP11-96D1.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2720-2729
0.024
8
6mer
1496-1518
0.001
1
LINC01049
hsa-miR-19b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000426840
Biotype: lincRNA
Gene id: ENSG00000234384
Gene Name: LINC01049
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
621-631
0.025
4
XLOC_005492
hsa-miR-19b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012614
Biotype: transcript isomorph
Gene id: XLOC_005492
Gene Name: XLOC_005492
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
406-432
0.025
7
NRG1-IT1
hsa-miR-19b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520444
Biotype: sense_intronic
Gene id: ENSG00000253974
Gene Name: NRG1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
692-717
0.025
1
LOC101926935
hsa-miR-19b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3969-3974
0.019
0
6mer
4621-4641
0.004
0
6mer
1681-1703
0.001
Not Conserved
6mer
1570-1574
0.001
Not Conserved
LOC145845
hsa-miR-19b-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_024264.1
Biotype: lincRNA
Gene id: NR_024264.1 (gene)
Gene Name: LOC145845
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
537-559
0.025
3
RP11-152L7.2
hsa-miR-19b-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456026
Biotype: lincRNA
Gene id: ENSG00000232100
Gene Name: RP11-152L7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
974-1000
0.017
0
7mer
637-660
0.008
0
AC105339.1
hsa-miR-19b-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000440089
Biotype: lincRNA
Gene id: ENSG00000228141
Gene Name: AC105339.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
168-189
0.010
3
6mer
1256-1281
0.007
3
6mer
1267-1291
0.005
1
6mer
1213-1234
0.003
2
XLOC_009312
hsa-miR-19b-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019512
Biotype: transcript isomorph
Gene id: XLOC_009312
Gene Name: XLOC_009312
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
207-214
0.025
0
RP11-747D18.1
hsa-miR-19b-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472120
Biotype: lincRNA
Gene id: ENSG00000239205
Gene Name: RP11-747D18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1081-1105
0.015
1
6mer
1595-1599
0.006
1
6mer
740-758
0.004
1
RP11-230G5.2
hsa-miR-19b-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537250
Biotype: lincRNA
Gene id: ENSG00000250748
Gene Name: RP11-230G5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
381-397
0.025
4
RP11-159G9.5
hsa-miR-19b-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000498458
Biotype: lincRNA
Gene id: ENSG00000229729
Gene Name: RP11-159G9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
499-504
0.025
8
LINC01057
hsa-miR-19b-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452922
Biotype: lincRNA
Gene id: ENSG00000224081
Gene Name: LINC01057
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
927-946
0.011
1
7mer
873-897
0.008
3
6mer
342-361
0.004
Not Conserved
6mer
801-816
0.002
1
RP11-712B9.2
hsa-miR-19b-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534864
Biotype: antisense
Gene id: ENSG00000245552
Gene Name: RP11-712B9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-263
0.025
1
XLOC_004312
hsa-miR-19b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009369
Biotype: transcript isomorph
Gene id: XLOC_004312
Gene Name: XLOC_004312
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
449-463
0.025
1
CTD-2275D24.1
hsa-miR-19b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512458
Biotype: lincRNA
Gene id: ENSG00000251041
Gene Name: CTD-2275D24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
381-388
0.025
2
LINC00923
hsa-miR-19b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000618064
Biotype: lincRNA
Gene id: ENSG00000251209
Gene Name: LINC00923
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-64
0.022
1
6mer
418-429
0.003
1
RP11-9E17.1
hsa-miR-19b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000620414
Biotype: sense_intronic
Gene id: ENSG00000277534
Gene Name: RP11-9E17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1834-1849
0.021
1
6mer
797-813
0.004
1
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